Gene detail information of Glyur000952s00025628 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20590.1 | 2.00E-73 | TRICHOME BIREFRINGENCE-LIKE 5 |
| NR | XP_004507926.1 | 2.88E-109 | PREDICTED: uncharacterized protein LOC101489461 isoform X2 [Cicer arietinum] |
| Swissprot | tr|F4K5K4|TBL5_ARATH | 1.00E-88 | Protein trichome birefringence-like 5 |
| trEMBL | tr|I1MSI3|I1MSI3_SOYBN | 4.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G06370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00952 | 19736 | 24497 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000952s00025628.1 | PF13839.1 | PC-Esterase | 21 | 161 | 1.10E-36 |
| Glyur000952s00025628.2 | PF13839.1 | PC-Esterase | 151 | 278 | 2.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.740 |
| SRR1783600 | control | 10.244 |
| SRR1783602 | moderate drought stress | 9.491 |
| SRR1811619 | moderate drought stress | 9.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.717 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.531 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.135 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.380 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.348 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.175 |
| SRR2868004 | Drought Stress (root) | 9.857 |
| SRR2967015 | Control (root) | 11.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.730 |
| SRR9715740 | Leaf | 1.649 |
| SRR9715741 | Leaf | 1.346 |
| SRR9715739 | Root | 2.642 |
| SRR9715742 | Root | 7.120 |
| SRR9715743 | Root | 5.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.109 |
| SRR8749028 | MeJA induced 9h | 5.997 |
| SRR8749029 | MeJA induced 9h | 5.022 |
| SRR8749030 | Uninduced | 2.357 |
| SRR8749031 | Uninduced | 0.964 |
| SRR8749032 | Uninduced | 1.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.849 |
| SRR8400027 | Control - Root | 13.762 |