Gene detail information of Glyur000951s00029031 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30320.1 | 1.00E-127 | Pseudouridine synthase family protein |
| NR | XP_004490688.1 | 0 | PREDICTED: putative tRNA pseudouridine synthase-like [Cicer arietinum] |
| COG | YP_006443487.1 | 5.00E-13 | pseudouridylate synthase I [Anaerobaculum mobile DSM 13181] |
| Swissprot | tr|O22928|PUSH_ARATH | 9.00E-156 | Putative tRNA pseudouridine synthase |
| trEMBL | tr|G7KFJ6|G7KFJ6_MEDTR | 0 | tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00951 | 74944 | 79272 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000951s00029031.1 | PF01416.15 | PseudoU_synth_1 | 64 | 177 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.375 |
| SRR1783600 | control | 5.119 |
| SRR1783602 | moderate drought stress | 7.138 |
| SRR1811619 | moderate drought stress | 6.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.259 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.255 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.628 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.118 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.175 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.291 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.305 |
| SRR2868004 | Drought Stress (root) | 12.949 |
| SRR2967015 | Control (root) | 6.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.684 |
| SRR9715740 | Leaf | 2.955 |
| SRR9715741 | Leaf | 2.518 |
| SRR9715739 | Root | 0.844 |
| SRR9715742 | Root | 2.372 |
| SRR9715743 | Root | 2.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.698 |
| SRR8749028 | MeJA induced 9h | 2.527 |
| SRR8749029 | MeJA induced 9h | 2.715 |
| SRR8749030 | Uninduced | 2.528 |
| SRR8749031 | Uninduced | 4.203 |
| SRR8749032 | Uninduced | 1.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.158 |
| SRR8400027 | Control - Root | 9.090 |