Gene detail

Gene detail information of Glyur000951s00029030

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30320.1	9.00E-135	Pseudouridine synthase family protein
NR	XP_006575435.1	0	PREDICTED: putative tRNA pseudouridine synthase-like isoform X1 [Glycine max]
COG	YP_007311955.1	1.00E-11	pseudouridylate synthase I [Methanomethylovorans hollandica DSM 15978]
Swissprot	tr\|O22928\|PUSH_ARATH	8.00E-165	Putative tRNA pseudouridine synthase
trEMBL	tr\|K7KAB0\|K7KAB0_SOYBN	0	tRNA pseudouridine synthase {ECO:0000256\|RuleBase:RU003792}

Sequence

Transcript Sequence

>Glyur000951s00029030.1
ATATATGTTATAAACTGTGAAGTTAAGGATGAAGATGGCTGCTTCATCTCTGCGAGTCCCACTCTTTCCTTTGCTCAAAAAAACTCCCTATACACTTACACCTGCTACTGGGAGGAGAAGATGGGAGCGGTTCCGTTGCTGCTCTTGTTCCCCTCCTCCTNCTACCCAATCATGTACTTCATGGCAACCATTTCGTAAGAAAAAGGTTGTTATGCGGGTCGCCTATGTCGGCACCAATTACCGAGGTCTCCAAATGCAACGAGATGAATGCTCTGTCTCCACTATTGAGAAAGAACTGGAAAGTGCAATATTCAAGGCTGGTGGCATCCGTGACAGCAATTTTGGGGATCTGCAGAAGATTGGATGGGCCAGAAGTAGCCGAACTGACAAAGGAGTTCACTCTCTTGCGACCATGATATCCTTTAAAATGGAAATTCCAGATAATGCTTGGAATGGAGACCCTTATGGGTTTGCCCTTGCAAATTATGTTAACTCTTATCTTCCTTGTGACATCAAAGTTATAAGCATTTTGCCTTCACAAGGGAGTTTTGATCCCAGAAAGGAATGTGTTTTGCGGAAGTACTCCTACCTTCTTCCTGCTGAAATTATTGGTATTCAAAGCCACACTAGCAATGATGAAATTGATTACCACCTGTCAGAGTTCAATGATATTCTTAAAGAATTTGAGGGGGTACATCCTTTCCATAATTATACAGCTAGGTCCAGGTACAGAAAACATTTTCCTCGTAGACAGTCACCATCAAAGAGTGGCACATCAGCAAAAGAGGGTTTATCAGCCTACAATTCAGAATATGAGGACANTGATGGGGAAGAAAATTTTAACATTGATGAGGCATTTACAGAAAACATAGTGTTCCAAAACCATAAGTCTTCAGAAACTCGTGATTTNGGTGAACCTGTCATTGGCACTGACAATAAGAACGGAAATGGTTTACATGATCAAGTCTCTAGATTGGTTGTCCGTGCAAAATGGTTATATGAACCTGATGAAGCAGACAGATTAAATGCTTCCCATTTCAGAAAAGTTTTGAAGTGCTCTTGTGGAAAGCTGGAACGATCACTNGGATATAATTACATAGAGCTCTGCATAGAGGGAGAGTCCTTCATGTTGCATCAGATAAGGAAAATGGTTGGGACTGCCGTGGCTGTAAAACGCAAGTTACTGCCAAGAGATATTACAGTACTGTCACTGTCAAAGTTCTCGAGAATCATTCTACCCCTTGCACCATCAGAAGTTCTAATATTAAGGGGAAACAACTTCTCAATTAGAGTAAAGCCAGGAAATGTAACGAGGCCTGAAATGCAGACAATAGTTGAATCAGAAGAAATTAACAAGGTTGTTGNTGATTTTTACACATCAGTTATGTTACCTCAAGTTTCAAACTTTTTGGACCCATCAAGATTTCCTTGGGAGGAATGGATTGAGAAATTGGATGCTAACACAAGCATATCAAGTGATCAGTTAGATGAGGTCAGGAAGGCTTGGAATTTGTCAAAAGAAAATTTTGAAAGCACAACCAGTGCTCATCTTTGACAAGTGAGGTAAAAAGGCCATGATTGCTCTTCTTATCCTTTCACAATTTGGTCTCTTAACACGCCTTAAATAAAGCTTCCATTGGCTAGCATATGCATTTTTTTTTATTAGCTCTTGCCAAAAGAGTAGGTTGNTGTTATGTGTCCCTTGCTGTATGGAGAAGGAAGTCATTCTTATATTTGTTCCGATGAGTAATGCTAGTAANACACTCTCTAACAATGGACTATCATGCTGGCTTTATAGAAGAATTTGGTTCGAGAGATGTATTTTGATTGGGTGTGGAAATGAATCCTCAAGAATTCATCAAATGGAACGTCCTATGAGAATAATTTCAGAGGCTGACAAAAGCTCTATAGTCAACGAANTCCGCTTCAGATTCCACAAGCAGCTAAGAATAATCTTTCCATATTGGGTTAGAGATGGGTCATGGGAGGCTTCTGACTTGCTGTAGGCAATCATTTACACTCTGAAATGGATGTGTACTTTCATGTTACATTGACATTCCTATCTTCTGCNTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00951	63948	68790	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001522 pseudouridine synthesis

GO:0009451 RNA modification

molecular_function

GO:0003723 RNA binding

GO:0009982 pseudouridine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000951s00029030.1	PF01416.15	PseudoU_synth_1	64	177	1.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.561
SRR1783600	control	0.527
SRR1783602	moderate drought stress	0.568
SRR1811619	moderate drought stress	0.672

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.436
DRR006520	Root Summer glycyrrhizin high producing strain	1.539
DRR006521	Root Winter glycyrrhizin high producing strain	0.848
DRR006522	Root Winter glycyrrhizin high producing strain	1.050
DRR006523	Root Summer glycyrrhizin low producing strain	1.822
DRR006524	Root Summer glycyrrhizin low producing strain	1.698
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.661
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.675

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.526
SRR2868004	Drought Stress (root)	1.376
SRR2967015	Control (root)	1.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.387
SRR9715740	Leaf	0.653
SRR9715741	Leaf	0.347
SRR9715739	Root	0.143
SRR9715742	Root	0.339
SRR9715743	Root	0.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.312
SRR8749028	MeJA induced 9h	0.531
SRR8749029	MeJA induced 9h	0.920
SRR8749030	Uninduced	0.107
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.171

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.468
SRR8400027	Control - Root	1.036