Gene detail information of Glyur000951s00029024 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05340.1 | 2.00E-83 | Peroxidase superfamily protein |
| NR | NP_001241115.1 | 5.14E-171 | uncharacterized protein LOC100811170 precursor [Glycine max] |
| Swissprot | tr|A7NY33|PER4_VITVI | 1.00E-100 | Peroxidase 4 {ECO:0000250|UniProtKB:Q42578} (Precursor) |
| trEMBL | tr|C6TKG5|C6TKG5_SOYBN | 2.00E-171 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU23405.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00951 | 30626 | 42111 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000951s00029024.1 | PF00141.18 | peroxidase | 45 | 119 | 3.90E-18 |
| Glyur000951s00029024.1 | PF00141.18 | peroxidase | 123 | 270 | 2.50E-36 |
| Glyur000951s00029024.1 | PF00141.18 | peroxidase | 325 | 380 | 2.90E-11 |
| Glyur000951s00029024.1 | PF00141.18 | peroxidase | 382 | 519 | 8.20E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.219 |
| SRR1783600 | control | 0.223 |
| SRR1783602 | moderate drought stress | 0.112 |
| SRR1811619 | moderate drought stress | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.371 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.308 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.239 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.191 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.559 |
| SRR2868004 | Drought Stress (root) | 42.763 |
| SRR2967015 | Control (root) | 38.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.031 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.135 |
| SRR9715742 | Root | 0.234 |
| SRR9715743 | Root | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.927 |
| SRR8749028 | MeJA induced 9h | 6.175 |
| SRR8749029 | MeJA induced 9h | 1.401 |
| SRR8749030 | Uninduced | 2.369 |
| SRR8749031 | Uninduced | 0.613 |
| SRR8749032 | Uninduced | 0.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.568 |
| SRR8400027 | Control - Root | 6.021 |