Gene detail

Gene detail information of Glyur000951s00029022

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30330.1	3.00E-37	GCN5L1 family protein
NR	AFK45589.1	1.34E-77	unknown [Lotus japonicus]
Swissprot	tr\|O22929\|BL1S1_ARATH	1.00E-48	Biogenesis of lysosome-related organelles complex 1 subunit 1
trEMBL	tr\|I3SZ97\|I3SZ97_LOTJA	5.00E-78	Uncharacterized protein {ECO:0000313\|EMBL:AFK45589.1}

Sequence

Transcript Sequence

>Glyur000951s00029022.1
CTTTTATTTACCTTACCAATTGAAATTAGAATTTAATGGAAAAGAAGGGTAAGTGATGGACACAGAGCCGAAGGGTTTGGAAGCTTCTCTGCATAATTTGCTTAACCTTCACCACCACAACTCTCTCCTACTTGCCCATCAAACTGAGAAAGCTAAGAAAGATGCAATTAGGAAAGCGGAGCGCGTTTCGGATCTGTTGGTGGANGCGGTGAATGGTGGGGTGCAAGATTCCTTCATCAACCAGAAGCGAATTGAGCTTGAGACTCGAGCTCTTGCTTCCACTATCACAAGGTTCATGAAGCAAACGGATCAATGGCTTGCTTCTACCCATGCTCTCAACACCGCTCTCAAGGAAATTGGGGACTTTGAGAACTGGATGAAGATCATGGAATATGATTGTAAAAGTATCACTGCAGCTATACAAAACATTCATCAAGAGTGATCTTGCAGGTTGCAGTAAGTTTTCATGCAAGTGACCATGTAATTCTAATCCCTTTTTATTCATTTTTCTATTCTAGGCATAATACCCAATATCATGTAGTAGTTTACTAGATGACAATTTGGCTTGATTTTCAACAAAATAACCAGCTTAAAGAAGCAAGCAACAATTGATTAGTACCTGTATTCTGAATGTAAGTTATGTTTTGTTGTTGTCAAGCTTCATGAATGTTTAATTTGAAAGTTTTTTATGTACTCATTATAATGGTTTTGAGAATACATATTAGATAGGATTAAAAAAAATGAGATGCTTTGGCATTGTGCCTTTGCGTAATTATGAATCAATGAAGCCCAATTTTGCCATTTGCGTAATTCTCATTCTCCCCCTTTTTGCTGTTTTCTTCGTAACATCTGGACACATCAATCTGATGGAGTATTGCAGACCAAACAAACTAATGAAGCCCTTGCTTTGGCATGGGCTGTTAACCTTCAAAAATTAGCCAGTGGTTGTTATGTAGGTGAAAGAACAAGATCCAAAGAAGATTGCAAGAAGCTAAAAGTTTCCACTTAAATTCAATACCCATTATGAGATTGATAACTATGTCATTTATAGAATGATGACTGGCATCTGATGCAGTGAATGGAATCTAGTGGGATTCAACTAGGAAACTTTCAGTTCCAGATAGAGTTTTATCAGGTCATCTTGTTAAGGATCGTATATCTTGTATTAGGAACAGACATCTTAGCTATTACATGTGGTTTTACTCAANTTATTTTATAGCCTTTTACTGGTGGTTGCAGTAAACTGATGAAGGCAATGATGCACTTTTGACAATTTTACTCTTTGTTGCCTTTATTGGGTAGCATAGGCCTTGGATTATAGTTCAGACTCATTTTTTTTTAACTTTGTTTCTACAAAATGTCTAAAGTCTAACCTACTGCTGAGATCTAGACATTCGTTGCTTTGGCAATAAGTTGGACTTAGCTTGATATTGGGGTCTTAAATTGACAATGCTAGAGAATCGCTATGATTAGTCCTTTAGATTACAACTGCACTATCTGAGATATACTTGTCGGTCCTCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00951	21439	23924	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000951s00029022.1	PF06320.8	GCN5L1	16	127	1.70E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.277
SRR1783600	control	6.398
SRR1783602	moderate drought stress	6.291
SRR1811619	moderate drought stress	6.113

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.125
DRR006520	Root Summer glycyrrhizin high producing strain	13.856
DRR006521	Root Winter glycyrrhizin high producing strain	26.888
DRR006522	Root Winter glycyrrhizin high producing strain	25.927
DRR006523	Root Summer glycyrrhizin low producing strain	19.010
DRR006524	Root Summer glycyrrhizin low producing strain	19.201
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.882
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.896

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.431
SRR2868004	Drought Stress (root)	9.399
SRR2967015	Control (root)	10.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.825
SRR9715740	Leaf	11.773
SRR9715741	Leaf	6.815
SRR9715739	Root	7.410
SRR9715742	Root	4.531
SRR9715743	Root	6.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.918
SRR8749028	MeJA induced 9h	12.402
SRR8749029	MeJA induced 9h	19.518
SRR8749030	Uninduced	12.787
SRR8749031	Uninduced	8.597
SRR8749032	Uninduced	14.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.755
SRR8400027	Control - Root	18.438