Gene detail

Gene detail information of Glyur000950s00029446

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45400.1	2.00E-68	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003623704.1	1.18E-178	Dihydroflavonol-4-reductase [Medicago truncatula]
COG	YP_002015379.1	1.00E-28	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q40316\|VESTR_MEDSA	2.00E-180	Vestitone reductase
trEMBL	tr\|A2Q3W4\|A2Q3W4_MEDTR	4.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:AFK37037.1}

Sequence

Transcript Sequence

>Glyur000950s00029446.1
GATCAACATTTTAGAAAAAAATCCTTATCTCCTAGATGCATTTTCTGTTGAATGAAAAAACCGATCGAAATAACATCAGTGAAGATTATTCAACAAAAATGTTTGACTGAAAAGCGAGTCCAATAATGTGACCTCAAGTGATGGCAAAAGCAACCATTAAATATTTGTGTGTGCGTATATAAATAAATCAAGCAGAACAAGACATATTAGAGAAGTTGAGGACAACACAAGAAAAAGGAAACATTGCCACAGGAAGAGTGTTCAACAAATGGCTGAGGGTAAAGGAAGAGTCTGTGTCACTGGAGGTACAGGGTTTCTTGGTTCATGGCTCATCAAGAGACTCCTTGAAGATGGATACGGTGTTAATACTACTATTAGATCTGATCCAGGGTGTGTTGGGGTATTCCACACTGCTTCCCCAACTGATTTTGCAGTGAGTGAGCCAGAGGAAATAGTGACCAAAAGAACCGTTGATGGAACATTGGGAATTTTAAAGGCATGCAAGAATTCAAAGACCGTGAAGAGAGTTGTGTACACTTCGAGTGGCGCTGCTGTTTCCTGGGGTGGCACAGAGAAGGATGTGTTGGATGAGAGTGATTGGAGTGATGTGGATATGCTTAGAAGTGTGAAGCCATATAGTTGGTCTTATGCAGTCTCCAAGACCATGACAGAGAAGGCAGTGCTTGAATTTGGGGAACAACATGGGTTAGATGTTGTGACTCTAATACTCCCTTTTATTGTTGGACGCTTCATTTGTCCCAAGATTCCTGACTCAATTGAGAAAGCGCTTGTTTTGGTTTTAGGCAAAAGGGAACAAATTGGTGTCACTCGTTTCCATATGGTACATGTGGAAGATGTGGCTAGAGCACATATATTCCTACTTGAGCATCCTAATCCAAAAGGGAGATATAATTGTTCACCATTCATTGTGCCTATTGAAGAGGTCTCTGAACTTCTTTCAGCCAAATACCCAGAATATCAAATACCAACAGTAGAAGAGCTGAAGGAAATTAAAGGTGCCAAGTTACCAGATTTAAAATCAAAGAAACTCGTCGATGCTGGTTTCGAATTCAAGTATACCATTGAGGATNTGTTTGATGATGCGATTCAATGCTGCAAGGAAAAGGGCTATCTTTAATCTATTTTAGTCATCAAATTNACAAAACAATAAATTGCCAAAGATGATTTAATAGTTTGGACTATTTCATCTCCCTAGCAATGATGTCTTATGACATGTAGTACCAGTATATGCATGAAGTTATCTATATATCTATATCTATATCTATCTATCTATCTATATATATATATATATAAAAGAGTGTTGTTGGGGTGTTTTTGTCATTTTTAAAGTTAAATATGAGTAATTTGGTGAGTGTATTTTTGGGGTTAACGAGCATTAATAAATTAAGGGGCGTGTTGGTAAAAGAATATCGGGGGTTAGAGGTATTCTAAATAATTTCTTCATTTGCAATTTATAATCGCTCATTAATTGCTGAGACGGTTTACTGGAAATGAGATTTTAATAACTTTTATTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00950	4426	7303	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000950s00029446.1	PF01370.16	Epimerase	8	35	0.00016
Glyur000950s00029446.1	PF01370.16	Epimerase	45	216	4.80E-17
Glyur000950s00029446.2	PF01370.16	Epimerase	8	42	4.80E-05
Glyur000950s00029446.2	PF01370.16	Epimerase	45	201	4.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	109.513
SRR1783600	control	110.385
SRR1783602	moderate drought stress	88.605
SRR1811619	moderate drought stress	88.644

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.382
DRR006520	Root Summer glycyrrhizin high producing strain	1.556
DRR006521	Root Winter glycyrrhizin high producing strain	8.910
DRR006522	Root Winter glycyrrhizin high producing strain	8.729
DRR006523	Root Summer glycyrrhizin low producing strain	0.945
DRR006524	Root Summer glycyrrhizin low producing strain	0.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.804
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	320.022
SRR2868004	Drought Stress (root)	636.794
SRR2967015	Control (root)	385.206

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	86.847
SRR9715740	Leaf	45.288
SRR9715741	Leaf	99.096
SRR9715739	Root	75.493
SRR9715742	Root	187.211
SRR9715743	Root	169.820

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	81.605
SRR8749028	MeJA induced 9h	128.677
SRR8749029	MeJA induced 9h	79.936
SRR8749030	Uninduced	702.172
SRR8749031	Uninduced	632.620
SRR8749032	Uninduced	339.914

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	525.864
SRR8400027	Control - Root	381.970