Gene detail information of Glyur000949s00028897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18100.1 | 1.00E-35 | Ribosomal protein L32e |
| NR | NP_001237268.1 | 1.87E-58 | uncharacterized protein LOC100527779 [Glycine max] |
| COG | YP_004004430.1 | 3.00E-15 | 50S ribosomal protein L32e [Methanothermus fervidus DSM 2088] |
| Swissprot | tr|P49211|RL321_ARATH | 3.00E-52 | 60S ribosomal protein L32-1 |
| trEMBL | tr|C6T5E0|C6T5E0_SOYBN | 7.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G35530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00949 | 94731 | 97165 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000949s00028897.1 | PF01655.13 | Ribosomal_L32e | 15 | 91 | 1.10E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.051 |
| SRR1783600 | control | 57.028 |
| SRR1783602 | moderate drought stress | 46.306 |
| SRR1811619 | moderate drought stress | 46.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 174.621 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 171.856 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 87.788 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 85.276 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 97.266 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.417 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 66.798 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 66.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 187.427 |
| SRR2868004 | Drought Stress (root) | 132.188 |
| SRR2967015 | Control (root) | 109.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.020 |
| SRR9715740 | Leaf | 106.433 |
| SRR9715741 | Leaf | 90.513 |
| SRR9715739 | Root | 35.998 |
| SRR9715742 | Root | 60.420 |
| SRR9715743 | Root | 51.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 199.921 |
| SRR8749028 | MeJA induced 9h | 66.894 |
| SRR8749029 | MeJA induced 9h | 104.293 |
| SRR8749030 | Uninduced | 19.045 |
| SRR8749031 | Uninduced | 20.596 |
| SRR8749032 | Uninduced | 17.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 160.731 |
| SRR8400027 | Control - Root | 133.639 |