Gene detail

Gene detail information of Glyur000949s00028892

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55320.1	0	acyl-activating enzyme 18
NR	XP_003531240.1	0	PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Glycine max]
COG	YP_007081903.1	7.00E-174	acyl-CoA synthetase/AMP-acid ligase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q84P17\|AEE18_ARATH	0	Probable acyl-activating enzyme 18, peroxisomal
trEMBL	tr\|I1KSB3\|I1KSB3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G11980.1}

Sequence

Transcript Sequence

>Glyur000949s00028892.1
TGCAATTGGAAGTTGAAGGAAGAGGTACAGAAATCAAAAATGGGAAAGTGCATAAGGGAGTTGGGAGTGGAGGAGTTTGTGAATGCTGGCTTGTCACTCGCAGATGCCAATCAATTCAATGCTGTTTTCAGGGATGTGCTCTCCCTCTCCTCTGACGACCCAACTGACATTTGGCGCCATCTCGTCACCCTTAGAGTCCTCAAACCATCGCACCCTCATTCCTTGCATCAGCTTATCTTCTACTCTCTCCATCATCACTCTTCTTCCACCCCTTTTGCTTCTCCTCCTCATTATTGGTTCCCTTCTTTAGAGAAGTCTAGGCGCACCAACTTGGGTCGTCTCATGGAAACTCATGGTTTCAAGCTTTTAGGAGCATCCTACAAGGACCCCATCACTAAACCTCCAAAGTGTATTTTGGATACTTCAGACCCATCCAAACATGGAGGAACTTGGCTCCCNGGTGCTGTCCTCAACATTGCAGAGTGCTGCTTGCAACCCTCNTCCCACCCAAACAGACACGACGACAGCATTGCCATCGTTTGGAGAGATGAGGGCTTTGATGATTCCGAGGTTAACCGCATCACGCTCAAACAACTTCGACACCAAGTCATGNTGGTGGCAAATGCAATAGAAGCCACATTCTCAAGGGGTGATGCAATTGCAATTGACATGCAAATGACAGTCAACGCTGTTGTTATATACTTAGCCATTATTGTAGCAGGATGCGTGGTGGTATCTATAGCTGATAGCTTTGCACCAAAAGAAATTGCAACCCGCCTGCGTGTTTCCAAGGCAAAGGGTATTTTCACACAGGATTTTGTATCAAGAGGTGGCAAGAAATTCCCTTTGTACAGTCGAGTCATTGAGGCAGCTACATGTAAAGTTATCGTACTCCCTGTGATAGGGGATGNTGTAGGAGTACCAATAAGAGAACAAGACTTATCATGGAAGGTTTTTCTCTCTTCTAGCAGACAACACCCCAGGTCACATCATTACTCTCCAATCTATCAATCAATCGATTTTGTAACTAACATACTTTTCTCATCTGGAACCACAGGGGAGCCAAAAGCAATTCCTTGGACTCAACTTTCACCCATACGAAGTGCTGCAGATCTGTGGGCTGGTGTTGATGTTCAACCTGGAGATGTCTATTGCTGGCCTACAAATTTTGGATGGGCAATGGGACCACTTGTTTTATATTCATGCTTTCTATGCGGTGCAACNTTGGCTCTGTACCATGGATCTCCTCTAGGTCATGGTTTTGGAAAATTTGTTCAGGATGCAGGTGTTACCATTTTGGGGACAGTTCCAAGCATGGTAAAAGCTTGGAAGAGCACACAATGTATGGAGGGCTTGGACTGGACAAAGATAAAAACATTTTGTTCAACCGGAGAAACTTCAAATGTTGATGACAACCTTTGGCTTTCTTCAAAATCTTACTACAAACCAATAATTGAATGTTGTGGAGGCACTGAGCTCTCGACTNGTTACATCACGGGAAGTCCACTGCAGCCTCAAGCTTTTGGAGCATTTAGCACAACAACAATGACAACTGCCTTGGTCATCCTGGATGAAAATGGAGTTCCTTATCCAGAGGATGTTCCTTGTGTTGGTGAAGTGGGCTTATTCCCTCTATTTATGGGAGCTACTGATAGATTGCTTAATGCTGATAATGAGGAGGTTTACTTTANGGGAATGCCCATTTACAAAGGAAAGGTTCTTAGGAGACATGGAGATATAATCAAAAGAACGGTTGGAGGCTATTTCTATGTACAAGGGAGGGCTGATGACACCATGAATCTTGGTGGAATAAAGACAAGTTCCGTAGAAATTGAGCGTGTCTGTGACCAGGCTGATGAATGCATTTTGGAGACAGCTGCAATCAGTGTTGCTCCTGCAAATGGAGGCCCGGAACAACTGGTTATATTNGTAGTTTTAAAGAAAGGATACAATTCCAATGCGGAAGCTCTGAAGAAAAATATCTCTAAAGCCATTCAAAGCAACCTTAATCCTTTGTTCAAGGTAAGCCTTGTTAAAATTGTGCCCGAGTTTCCTAGAACGGCTTCAGACAAATTGCTGAGAAGGGTTTTGAAAGATCAGATGAAACGTGAGCTATCAGTTCATAGCAAACTTTAGTGACATCATTGATTCACAACAGACCAGAGCAGACATCAAGCTTTATTTCAGTTAATGTGGAAACATTAAAATACTCTCTAATAATAAGTATTGCAAATTTGCAATGTAGAGACCTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00949	56043	65266	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000949s00028892.1	PF00501.23	AMP-binding	157	588	7.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.837
SRR1783600	control	1.876
SRR1783602	moderate drought stress	2.545
SRR1811619	moderate drought stress	2.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.330
DRR006520	Root Summer glycyrrhizin high producing strain	3.426
DRR006521	Root Winter glycyrrhizin high producing strain	0.623
DRR006522	Root Winter glycyrrhizin high producing strain	0.756
DRR006523	Root Summer glycyrrhizin low producing strain	1.595
DRR006524	Root Summer glycyrrhizin low producing strain	1.579
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.982
SRR2868004	Drought Stress (root)	1.567
SRR2967015	Control (root)	2.064

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.737
SRR9715740	Leaf	0.756
SRR9715741	Leaf	1.282
SRR9715739	Root	0.151
SRR9715742	Root	0.589
SRR9715743	Root	0.392

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.010
SRR8749028	MeJA induced 9h	0.619
SRR8749029	MeJA induced 9h	1.176
SRR8749030	Uninduced	0.127
SRR8749031	Uninduced	0.192
SRR8749032	Uninduced	0.328

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.361
SRR8400027	Control - Root	4.900