Gene detail

Gene detail information of Glyur000949s00028884

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13620.1	7.00E-68	Amino acid permease family protein
NR	XP_004504331.1	1.33E-156	PREDICTED: probable polyamine transporter At3g13620-like [Cicer arietinum]
COG	YP_004902067.1	7.00E-17	putative amino acid transporter [Kitasatospora setae KM-6054]
Swissprot	tr\|Q9LHN7\|PHSC_ARATH	9.00E-95	Probable polyamine transporter At3g13620
trEMBL	tr\|K7L630\|K7L630_SOYBN	5.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G11960.2}

Sequence

Transcript Sequence

>Glyur000949s00028884.1
ATGGTGAAGAATCAGCAGTTGGTGCAGCAGGGCCACTCTTTGCAATCCTTGGCTTTGTGGTATTCCCTTTCATATGGAGCATCCCAGAGGCACTCCTCACTGCTGAATTGGCCACAACTTTCCCAGGAAATGGTGGTTTTGTCATATGGGCCAATGAAGCCTTTGGTCCCTTCTGGGGTTCCCTCATGGGCTATTGGAAGTTTACCTCGCTACGTGTCAATTTTCCTCTCCACTTCTTTGCTATCCTTTTTGAACTACTCTGGTTTGGCCATAGTTGGTTACACTGCTGTTGGTCTAGGTGTTATTTCCCTTTTGCCCTTTTTGTTGATGTCTTTGATTTCATTGCCCCAAATAGATCCCACTAGGTGGCTCAGTTTGGGCCAAGAGGGTGTTGAAAAGGATTGGACTTTATACTTCAACACCATCTTTTGGAACTTGAACTTTTGGGATAGTGCTAGTACTTTAGCTGGTGAAGTTGATCAACCCCATAAGACTTTCCCAAAGGCTTTGTTATCTGCTGGGTTGCTTACTTGTTTGGCCTATATAATTCCCTTGCTTGCTGCTACTGGGGCTATGCCATTGGATCAACAAGATTGGGTTGGTGGGTATTTTGCAAATGTGGCTGGGGTTATTGCTGGAAGGCTTTTTGAGGCTCAATTGAGTAGTGCTGCATATCAGCTTTTGGGTATGTCTGATTTGGGGTTTATACCAAGAATCTTTGGTGAAAGTTTGGGGATGCTTTTGGAGTTTGCTTCTTTCCTTCGGTTGAGGAGGAAATTCCCTTCTTTGAAAAGGCCTTTTGAGGTTCCACTTGGGTTCCTTGGTCTTGTCCTAATGTGCTTGGTTCCTTCAGTGCTTTTGGTCTATGTGATGACTGTTGCTACCAGAATTGTTTATGTGGCTAGTGCTTTCTTGACATGCTTTGGGATCGTGTTGTATTATTTTATGAATCTTTGCAAGTCCAGGAAGTGGATTGAATTCAGTGGCGTAGGAGATAAATTGGATGAAGATGATGATATTATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00949	15193	16466	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000949s00028884.1	PF13520.1	AA_permease_2	74	316	1.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.964
SRR1783600	control	7.364
SRR1783602	moderate drought stress	5.459
SRR1811619	moderate drought stress	5.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.299
DRR006520	Root Summer glycyrrhizin high producing strain	5.097
DRR006521	Root Winter glycyrrhizin high producing strain	0.320
DRR006522	Root Winter glycyrrhizin high producing strain	0.104
DRR006523	Root Summer glycyrrhizin low producing strain	17.020
DRR006524	Root Summer glycyrrhizin low producing strain	18.424
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.002
SRR2868004	Drought Stress (root)	63.220
SRR2967015	Control (root)	52.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.864
SRR9715740	Leaf	3.278
SRR9715741	Leaf	2.804
SRR9715739	Root	7.068
SRR9715742	Root	7.179
SRR9715743	Root	7.772

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.352
SRR8749028	MeJA induced 9h	5.276
SRR8749029	MeJA induced 9h	6.162
SRR8749030	Uninduced	5.403
SRR8749031	Uninduced	7.745
SRR8749032	Uninduced	1.357

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.086
SRR8400027	Control - Root	24.480