Gene detail

Gene detail information of Glyur000949s00028883

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13620.1	5.00E-151	Amino acid permease family protein
NR	XP_006585159.1	0	PREDICTED: probable polyamine transporter At3g13620-like [Glycine max]
COG	YP_004902067.1	9.00E-58	putative amino acid transporter [Kitasatospora setae KM-6054]
Swissprot	tr\|Q9LHN7\|PHSC_ARATH	0	Probable polyamine transporter At3g13620
trEMBL	tr\|K7L630\|K7L630_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G11960.2}

Sequence

Transcript Sequence

>Glyur000949s00028883.1
ATGGATGAATCTGAATCCCTTCACCACCAACATCTCCTCCAAGACCACAGGGCAGAAGCAGCTCAGGATGATCCAACTTCTTCAAGCCCCAAATCACACAAGAAGAAGAACAACAAGAACAAGAAGCTAGCTCTTCTCCCTCTAATCTTCCTCATCTATTTTGAGGTAGCCGGTGGTCCATATGGTGAAGAATCAGCAGTTGGTGCAGCAGGGCCACTCTTTGCAATCCTTGGCTTTGTGGTATTCCCTTTCATATGGAGCATCCCAGAGGCACTCCTCACTGCTGAATTGGCCACAACTTTCCCAGGAAATGGTGGTTTTGTCATATGGGCCAATGAAGCCTTTGGTCCCTTCTGGGGTTCCCTCATGGGCTATTGGAAGTTCTTCAGTGGTGTCATAAACTTAGCCTCATACCCAGTTCTATGCATAGACTACATCAAACTTGTTATCCCAGCTTTGTCCTCAGGTTTACCTCGCTACGTGTCAATTTTCCTCTCCACTTCTTTGCTATCCTTTTTGAACTACTCTGGTTTGGCCATAGTTGGTTACACTGCTGTTGGTCTAGGTGTTATTTCCCTTTTGCCCTTTTTGTTGATGTCTTTGATTTCATTGCCCCAAATAGATCCCACTAGGTGGCTCAGTTTGGGCCAAGAGGGNGTTGAAAAGGATTGGACTTTATACTTCAACACCATCTTTTGGAACTTGAACTTTTGGGATAGTGCTAGTACTTTAGCTGGTGAAGTTGATCAACCCCATAAGACTTTCCCAAAGGCTTTGTTATCTGCTGGGTTGCTTACTTGTTTGGCCTATATAATTCCCTTGCTTGCTGCTACTGGGGCTATGCCATTGGATCAACAAGATTGGGTTGGTGGGTATTTTGCAAATGTGGCTGGGGTTATTGCTGGGAAGTGGTTGAAGTATTGGATGGAAATTGGTGCTGTTCTTTCAATTGTAGGGCTTTTTGAGGCTCAATTGAGTAGTGCTGCATATCAGCTTTTGGGTATGTCTGATTTGGGGTTTATACCAAGAATCTTTGGTGAAAGGTCAAAGTGGTTTAACACTCCTTGGATGGCAATTTTGGTGTCAACGGTTATAGCACTTGCCATGTCATTTTTCACCTTCACTGATATCATATCTACTGTGAATTTCTTGTATAGTTTGGGGATGCTTTTGGAGTTTGCTTCTTTCCTTCGGTTGAGGAGGAAATTCCCTTCTTTGAAAAGGCCTTTTGAGGTTCCACTTGGGTTCCTTGGTCTTGTCCTAATGTGCTTGGTTCCTTCAGTGCTTTTGGTCTATGTGATGACTGTTGCTACCAGAATTGTTTATGTGGCTAGTGCTTTCTTGACATGCTTTGGGATCGTGTTGTATTATTTTATGAATCTTTGCAAGTCCAGGAAGTGGATTGAATTCAGTGGCGTAGGAGATAAATTGGATGAAGATGATGATATTATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00949	12355	13809	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000949s00028883.1	PF13520.1	AA_permease_2	66	432	2.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.998
SRR1783600	control	6.963
SRR1783602	moderate drought stress	5.651
SRR1811619	moderate drought stress	5.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.501
DRR006520	Root Summer glycyrrhizin high producing strain	6.217
DRR006521	Root Winter glycyrrhizin high producing strain	0.227
DRR006522	Root Winter glycyrrhizin high producing strain	0.305
DRR006523	Root Summer glycyrrhizin low producing strain	18.440
DRR006524	Root Summer glycyrrhizin low producing strain	18.443
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.342
SRR2868004	Drought Stress (root)	143.775
SRR2967015	Control (root)	118.260

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.117
SRR9715740	Leaf	9.431
SRR9715741	Leaf	7.690
SRR9715739	Root	24.482
SRR9715742	Root	23.360
SRR9715743	Root	24.648

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.063
SRR8749028	MeJA induced 9h	7.806
SRR8749029	MeJA induced 9h	5.970
SRR8749030	Uninduced	5.057
SRR8749031	Uninduced	7.449
SRR8749032	Uninduced	1.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.233
SRR8400027	Control - Root	75.164