Gene detail

Gene detail information of Glyur000947s00021198

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24760.1	2.00E-148	alpha/beta-Hydrolases superfamily protein
NR	KHN05806.1	0	Abhydrolase domain-containing protein FAM108C1-like protein [Glycine soja]
COG	YP_007114375.1	2.00E-36	alpha/beta hydrolase fold protein [Oscillatoria nigro-viridis PCC 7112]
trEMBL	tr\|V7AXF0\|V7AXF0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09975.1}

Sequence

Transcript Sequence

>Glyur000947s00021198.1
AACAATTCCAAAAGCAATTAAAAATAATAAAGAAATAAAATAAAAACCCCTGTGAGTGAGGTGAGGTGAGGTGAGGTTCAGTTCACATTGCTATACCATTAGCATCATCCATCTGGATTCTGAAAAAGAGAGGAGAGAAGAAAGAAGCACCACACCACAAAGAAGAAGAAGAAGAAGAAGAAGAAGGAATGTGAAGCAAGTGAGTGAGTGAAGAAGAAGAAGAAGAAGAAGATCTTAGGGGATTCATTCAATTGGCATTGGTGAAGTGAAGTGATGGGTGGAGTGACGTCATCGATGGCTGCCAAGCTGGCGTTCTTTCCGCCGAACCCACCGTCGTACAAGCTGGTGAAGGAAGAAGCGACGGGGCTGTTGCTGATGGAACCATTCCCACACCGCGAGAACGTGGAGGTTCTCAAGTTCCCCAACCGCCGCGGAACCGAGATCGTGGCGGTTTACGTTCGCCACCCCATGGCCAAATCAACCATCCTCTACTCCCACGGCAATGCCGCCGATATCGGCCAGATGTACGAGCTCTTCATCGAGCTCAGCATCCACCTCCGTGTCAACCTAATGGGGCTCAACGGCATGTTTTTTGTTCTGCAGGAGCTGTACATGGTTTTTGGTCTGCAGTGTGACCAAAGCTTACGTTTTAGCTTTTATATTAGCAAAGCAAATCTTTCTGCTGCTAGCAGTAGCATCATGAAAAACTCAAATGAATATTTTTTACAGCCAAGTGAGCATAATACATATGCTGATATTGAAGCTGTATATAAGTATCTTGAAGAGAACTATGGCACTAAGCAAGAAGACATAATTCTTTATGGTCANTCTGTTGGAAGTGGCCCTACTTTGGATCTTGCTTCCCGTTTACCCCGACTGAGGGCTGTTGTTCTCCACAGTCCTATACTATCAGGATTGAGAGTGATGTACCCTGTGAAAAGGACATACTGGTTTGACATTTATAAGAACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCATGGAACTGCTGATGAGGTTGTTGATTGCTCTCATGGCAAGCAGTTGTGGGAGCTATGTCAACAGAAATATGAACCTTTATGGCTCAAAGGTGGAAATCACTGTAATTTGGAGCTCTACCCAGAATACCTTAGACATCTCAGAAAATTCATATCAACGGTAGAAAAGCCGCCATCCCAAAGAGTGAGTTTTAGGAGAAGCGTGGATAGAGTTGAACAATCCAGAGGAAGTACTGATTGCTTCGAAACGCCAAGGAAGAGCACAGATCAGAGGGACAAACCAAGGAAAAGTACTGATAGGGCAGAAAAACTGAAATTTCATGAGTTCAAATTCAACAATACTGAAAAATTAGAGAAGTTAAGAGTCCAATTTGACCAGATGGAGAGGTCACGAAGAAGCGTAGAGTACAGCGACAAATCCAGAAGCATNGAGTTCCAAGATAAATCCAGGAGGAGCGTTGATGTTCAGTTTGAGAGGCCACGGAAGAGCATTGATTGGCTGGATAGAATTCGAGCTAGTTGAACCTCTTGAGGCATCTGTAATATTGGTACTGGGTTTGCAGCGTGGGAGGGAAAGGTACAAAGATACAGACACAGTTACTTATACTGGATGCTTAACTTATGGTTTGCAGAATGCATATGTTGTTGCTCTTGCAGTCTCATACTTCCATTGCATTGTTAGATTTGGATATGTTGTGGGACTCGATATTCTTAGTTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00947	85181	88546	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000947s00021198.1	PF12695.2	Abhydrolase_5	70	281	3.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.110
SRR1783600	control	9.972
SRR1783602	moderate drought stress	5.856
SRR1811619	moderate drought stress	5.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.203
DRR006520	Root Summer glycyrrhizin high producing strain	9.020
DRR006521	Root Winter glycyrrhizin high producing strain	0.192
DRR006522	Root Winter glycyrrhizin high producing strain	0.162
DRR006523	Root Summer glycyrrhizin low producing strain	4.407
DRR006524	Root Summer glycyrrhizin low producing strain	4.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.397
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.600
SRR2868004	Drought Stress (root)	12.993
SRR2967015	Control (root)	9.318

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.798
SRR9715740	Leaf	40.908
SRR9715741	Leaf	39.040
SRR9715739	Root	1.412
SRR9715742	Root	3.737
SRR9715743	Root	3.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.068
SRR8749028	MeJA induced 9h	15.093
SRR8749029	MeJA induced 9h	10.302
SRR8749030	Uninduced	1.789
SRR8749031	Uninduced	0.178
SRR8749032	Uninduced	0.331

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.270
SRR8400027	Control - Root	15.980