Gene detail

Gene detail information of Glyur000947s00021195.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31880.1	4.00E-119	Leucine-rich repeat protein kinase family protein
NR	KEH35011.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_001192956.1	5.00E-13	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9SKB2\|SBIR1_ARATH	1.00E-159	Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (Precursor)
trEMBL	tr\|A0A072UZY2\|A0A072UZY2_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH35011.1}

Sequence

Transcript Sequence

>Glyur000947s00021195.1
ATGGCTGTGAAAATCCAAATCCACCAAGAGTACCTCTTCCTATTCTCATTCTTATCCCTCTGTTTCTTCTTCTCAACCACCCATGTTAATGCTAACCTACACCTCCACCCTTCAGACCTCAAGTCTCTCTCATCACTCCAGAACAACCTCGGAGTCAACGCCACCAATAATCATAACCGTTCCCCGTGTAATGCGGAGGGCGTGTTCTGTGAGAGGAGGCTATCCAGCAACGAGAGCTACGTGCTCAGAATCACAAGGCTAGTCTTCAAATCAAAGCAACTCAAAGGGTTCCTTTCCCCTTCCATAGGACGCCTCACAGAGCTCAAAGAGCTCTCTCTTCCCCACAACAAAATCGNTGACCGAATCCCACCCTCCATCGTTGACCTCAAGAAGCTCGAGATTCTTGACCTCTCAANCAACCTCTTCTCAGGTGAAGTCCCTCCTGAATTGTCCTCTCTCATTCGCCTTCGCTTCCTCGATGTCTCTTCCAACCAGCTCTCTGGGAACTTGAATTTCCTCAAGTATTTCCCCAACCTGGAGACTCTCTCTGTTGCTGATAATCTCTTCACTGGGAGAGTCCCGGCTTCGGTTCGCTCCTTTCGCAATCTCAGACACTTCAACTTCTCCGGTAACCGTTTCCTCGAAGGAGGGTATCGCTATGAAGATACTGATAGTGATACTTCCCCCAAACGCTATATCTTTGCTGAGAGTAATTCAAATTCAAACAATGAAACAACAAGGAAGCAACATCCTCCTGCAGCTTCCCCTTCAAGTACTCACAACAAAAATAGTTCCTCTGCTGCTGCAGCTCCTGGTCCTGCAGCAGTTCATAACCACAAGCACAGGTCAAGCAAGAGGAAACTTGCTGGGTGGATTCTTGGCTTTGTGGCTGGGGCTTTTGCTGGTACTGCTTGTGGGTTCGTATTCTCCTTGTTGTTTAAGTTGGCTTTGGCTTTGATCAAGGGAGGAGGAAAGGGTTCTGGGCCTGCTATTTATAGCTCCTTGATTAAGAAAGCCGAGGACTTGGCTTTCTTGGAGAAAGAAGATGGGTTGGCTTCGATGGAGATCATTGGGAAAGGAGGGTGTGGAGAGGTTTACAAGGCCGAGTTACCGGGGAGCAATGGCAAGATGATTGCCATAAAGAAGATTATTCAGCCTCCCAAGGAGGCAACTGAGTTGGCTGAGGAAGACAGTAAGCTTCTGCATAAGAAGATGCGCCAGATTCGGTCGGAGATCAACACGGTGGGCCAGATTCGACACCGCAATCTTCTGCCTCTGCTGGCTCATGTCTCTAGGCCTGATTGTCACTACCTTGTGTATGAGTTCATGAAGAATGGGAGCTTGCAGGACGTGTTGAACAAGGTTGAAATGGCACCTGAGTATCACCAGATACTCAAGTTCACTGACAAGTGTGACATATACAGCTATGGGGTCATGCTTGGTGTCTTGGTTATGGGGAAGCTTCCTTCTGACGAGTTTTTCCAGCACACGGAAGAGATGAGTTTGGTCAAGTGGATGAGGAAGGTGATGACTTCGGCAGATCCCAAGGAAGCAATTGATGCAAGGCTCATAGGGAATGGATATGAGGAACAGATGCTTTTGGTTTTGAAGATTGCCTGTTTTTGCACCATGGATGATCCCAAGGAGAGGCCCAACAGTAAGGACATCAGGTGTATGTTGGCACAAATCAAGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00947	74880	76817	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000947s00021195.1	PF13855.1	LRR_8	107	166	2.00E-07
Glyur000947s00021195.1	PF00069.20	Pkinase	354	453	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.680
SRR1783600	control	9.575
SRR1783602	moderate drought stress	6.442
SRR1811619	moderate drought stress	6.267

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.777
DRR006520	Root Summer glycyrrhizin high producing strain	34.868
DRR006521	Root Winter glycyrrhizin high producing strain	0.824
DRR006522	Root Winter glycyrrhizin high producing strain	0.812
DRR006523	Root Summer glycyrrhizin low producing strain	38.110
DRR006524	Root Summer glycyrrhizin low producing strain	37.468
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.846
DRR006526	Leaf Summer glycyrrhizin high producing strain	104.978

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.293
SRR2868004	Drought Stress (root)	72.710
SRR2967015	Control (root)	164.107

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	330.178
SRR9715740	Leaf	251.306
SRR9715741	Leaf	406.319
SRR9715739	Root	121.084
SRR9715742	Root	312.099
SRR9715743	Root	269.191

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	67.573
SRR8749028	MeJA induced 9h	135.580
SRR8749029	MeJA induced 9h	28.240
SRR8749030	Uninduced	229.371
SRR8749031	Uninduced	29.623
SRR8749032	Uninduced	29.841

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.806
SRR8400027	Control - Root	27.148