Gene detail information of Glyur000947s00021193 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01680.1 | 2.00E-66 | |
| NR | XP_004501847.1 | 0 | PREDICTED: uncharacterized protein LOC101501922 [Cicer arietinum] |
| trEMBL | tr|A0A072UZM7|A0A072UZM7_MEDTR | 0 | Sieve element occlusion protein {ECO:0000313|EMBL:KEH35012.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00947 | 66683 | 70960 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000947s00021193.1 | PF14576.1 | SEO_N | 28 | 251 | 5.00E-87 |
| Glyur000947s00021193.1 | PF14577.1 | SEO_C | 387 | 594 | 1.60E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.441 |
| SRR1783600 | control | 0.410 |
| SRR1783602 | moderate drought stress | 0.574 |
| SRR1811619 | moderate drought stress | 0.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.460 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.483 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.250 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.652 |
| SRR2868004 | Drought Stress (root) | 20.243 |
| SRR2967015 | Control (root) | 29.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.488 |
| SRR9715740 | Leaf | 0.242 |
| SRR9715741 | Leaf | 1.466 |
| SRR9715739 | Root | 0.633 |
| SRR9715742 | Root | 2.466 |
| SRR9715743 | Root | 1.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.203 |
| SRR8749028 | MeJA induced 9h | 0.026 |
| SRR8749029 | MeJA induced 9h | 0.186 |
| SRR8749030 | Uninduced | 0.016 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.211 |
| SRR8400027 | Control - Root | 3.686 |