Gene detail

Gene detail information of Glyur000947s00021189

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24770.1	7.00E-76	31-kDa RNA binding protein
NR	XP_003523114.1	1.71E-137	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
COG	YP_005009167.1	6.00E-22	RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Swissprot	tr\|Q04836\|CP31A_ARATH	1.00E-109	31 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|I1JXD7\|I1JXD7_SOYBN	6.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G36420.2}

Sequence

Transcript Sequence

>Glyur000947s00021189.1
GATTCCTTGCTCTTCTGTTCATTTCAATTCATTATTCAAGTAGTATTTTTAAGTAACCCCTTATCCTTATTCTTCCCGCACCTCCTTCTAAACCCCTTCCACTCGCTACTCTGCTTATTCCTTCTCACACACACACACATGTCTATCACTGCCGCCACTGCCTTCAAATCGATGGCGGAATCATGCCTTCTCTCTCCACCCACTTTTGCACTCCTCTTCAACAAAACCAAACCCTCCAAACGCNCCTTCCTCTTATCTCTCTCCAAACCCCTCAAACTCCAACTCTCCTCCAACAACTCCCTCACCCTAACCGCCAAAACCCACCGCTCTCTCTTTCCCTTGTTCGTTGCCCACCAAGGAGATGGCGACACCCTCACCCTACAAGACCAACAACAACAACAAGAAGGTGTCAGTGAAACCGAAGCGAGCCTCTCCGATTGGNAACCCAACGGCGAAGAGGAAGCAGCAGCGGAAGGGGATTTCGTGGAACCATCTGAAGATGCGAAACTCTTTGTTGGCAACTTGCCTTATGACGTTGATAGTCAGAAACTCGCCATGCTTTTCGAGCAAGCCGGTACCGTCGAGATTGCTGAGGTTATTTATAACAGGGAAAGTGACCAGAGTCGTGGCTTTGGATTTGTCACCATGAGTACTGTCGAAGAAGCTGAGGAGGCTGTTGAGAAGTTCAACCGCTATGATTATGATGGAAGACTGTTGACCGTTAATAAGGCTTCTCCAAGAGGATCTCGGCCAGAACGCCCACCTCGCACCTCTGAACCTGCACTAAGAGTTTATGTCGGTAACTTGCCATGGGATGTTGATAATACTCGGCTCGAGCAAGTTTTCAGTGAACATGGCAAGGTTTTGCGTGCTCAGGTAGTCTCTGATAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTTACAATGTCCAATGAGACGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTCTGGATGGGAGGACAATCAGAGTGAGCGTTGCTGAAGACAGGCCCAGGCGAGGCTCCTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00947	55999	58544	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000947s00021189.1	PF00076.17	RRM_1	124	193	1.40E-19
Glyur000947s00021189.1	PF00076.17	RRM_1	218	288	6.90E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.437
SRR1783600	control	38.703
SRR1783602	moderate drought stress	40.518
SRR1811619	moderate drought stress	40.112

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.349
DRR006520	Root Summer glycyrrhizin high producing strain	31.306
DRR006521	Root Winter glycyrrhizin high producing strain	20.702
DRR006522	Root Winter glycyrrhizin high producing strain	21.551
DRR006523	Root Summer glycyrrhizin low producing strain	48.479
DRR006524	Root Summer glycyrrhizin low producing strain	48.371
DRR006525	Leaf Summer glycyrrhizin high producing strain	120.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	120.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.946
SRR2868004	Drought Stress (root)	28.051
SRR2967015	Control (root)	27.685

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	135.735
SRR9715740	Leaf	197.269
SRR9715741	Leaf	117.138
SRR9715739	Root	38.295
SRR9715742	Root	34.813
SRR9715743	Root	36.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.043
SRR8749028	MeJA induced 9h	33.929
SRR8749029	MeJA induced 9h	24.383
SRR8749030	Uninduced	8.197
SRR8749031	Uninduced	3.484
SRR8749032	Uninduced	7.682

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.529
SRR8400027	Control - Root	37.234