Gene detail information of Glyur000947s00021188.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57520.1 | 0 | seed imbibition 2 |
| NR | XP_004501851.1 | 0 | PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Cicer arietinum] |
| COG | YP_004464004.1 | 3.00E-56 | raffinose synthase [Mahella australiensis 50-1 BON] |
| Swissprot | tr|Q94A08|RFS2_ARATH | 0 | Probable galactinol--sucrose galactosyltransferase 2 |
| trEMBL | tr|I1JXD5|I1JXD5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G36410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00947 | 50655 | 54732 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH36 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000947s00021188.1 | PF05691.7 | Raffinose_syn | 9 | 561 | 4.60E-208 |
| Glyur000947s00021188.1 | PF05691.7 | Raffinose_syn | 585 | 711 | 2.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.727 |
| SRR1783600 | control | 0.688 |
| SRR1783602 | moderate drought stress | 1.308 |
| SRR1811619 | moderate drought stress | 1.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.995 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.933 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.263 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.728 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.709 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.473 |
| SRR2868004 | Drought Stress (root) | 41.584 |
| SRR2967015 | Control (root) | 31.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.433 |
| SRR9715740 | Leaf | 9.752 |
| SRR9715741 | Leaf | 56.038 |
| SRR9715739 | Root | 4.900 |
| SRR9715742 | Root | 15.648 |
| SRR9715743 | Root | 13.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 114.432 |
| SRR8749028 | MeJA induced 9h | 369.195 |
| SRR8749029 | MeJA induced 9h | 214.442 |
| SRR8749030 | Uninduced | 412.759 |
| SRR8749031 | Uninduced | 879.516 |
| SRR8749032 | Uninduced | 701.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.731 |
| SRR8400027 | Control - Root | 7.935 |