Gene detail information of Glyur000947s00021186 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36110.1 | 8.00E-17 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | NP_001238437.1 | 8.93E-94 | uncharacterized protein LOC100527339 [Glycine max] |
| COG | YP_004043858.1 | 7.00E-13 | 3'-5' exonuclease [Paludibacter propionicigenes WB4] |
| Swissprot | tr|Q84LH3|WEX_ARATH | 6.00E-16 | Werner Syndrome-like exonuclease |
| trEMBL | tr|C6T412|C6T412_SOYBN | 3.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G21130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00947 | 47583 | 48236 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000947s00021186.1 | PF01612.15 | DNA_pol_A_exo1 | 52 | 205 | 2.40E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.216 |
| SRR2967015 | Control (root) | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.543 |
| SRR8749028 | MeJA induced 9h | 1.602 |
| SRR8749029 | MeJA induced 9h | 2.268 |
| SRR8749030 | Uninduced | 3.136 |
| SRR8749031 | Uninduced | 34.769 |
| SRR8749032 | Uninduced | 18.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.022 |
| SRR8400027 | Control - Root | 0.119 |