Gene detail information of Glyur000947s00021182 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14420.4 | 6.00E-142 | RING domain ligase2 |
| NR | NP_001240870.1 | 0 | uncharacterized protein LOC100809850 [Glycine max] |
| Swissprot | tr|Q9LY87|RGLG2_ARATH | 8.00E-174 | E3 ubiquitin-protein ligase RGLG2 |
| trEMBL | tr|C6TIU9|C6TIU9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G36400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00947 | 32082 | 36520 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000947s00021182.1 | PF07002.11 | Copine | 121 | 269 | 2.60E-52 |
| Glyur000947s00021182.2 | PF07002.11 | Copine | 121 | 269 | 2.50E-52 |
| Glyur000947s00021182.2 | PF13920.1 | zf-C3HC4_3 | 403 | 443 | 5.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.753 |
| SRR1783600 | control | 71.938 |
| SRR1783602 | moderate drought stress | 47.561 |
| SRR1811619 | moderate drought stress | 47.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.887 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 63.987 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.468 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 120.161 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 120.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.346 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.748 |
| SRR2868004 | Drought Stress (root) | 42.194 |
| SRR2967015 | Control (root) | 36.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.858 |
| SRR9715740 | Leaf | 33.631 |
| SRR9715741 | Leaf | 35.030 |
| SRR9715739 | Root | 56.348 |
| SRR9715742 | Root | 60.710 |
| SRR9715743 | Root | 59.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 94.866 |
| SRR8749028 | MeJA induced 9h | 190.430 |
| SRR8749029 | MeJA induced 9h | 179.208 |
| SRR8749030 | Uninduced | 75.844 |
| SRR8749031 | Uninduced | 51.898 |
| SRR8749032 | Uninduced | 90.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 80.471 |
| SRR8400027 | Control - Root | 91.345 |