Gene detail information of Glyur000946s00037886.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24270.3 | 1.00E-52 | aldehyde dehydrogenase 11A3 |
| NR | KCW80287.1 | 2.28E-66 | hypothetical protein EUGRSUZ_C016461, partial [Eucalyptus grandis] |
| COG | YP_003307897.1 | 8.00E-31 | aldehyde dehydrogenase [Sebaldella termitidis ATCC 33386] |
| Swissprot | tr|P81406|GAPN_PEA | 3.00E-66 | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase |
| trEMBL | tr|A0A059CP94|A0A059CP94_EUCGR | 8.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:KCW80288.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00946 | 92209 | 94820 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00131 | gapN | EC:1.2.1.9 | Carbon metabolism | map01200 |
| Glycolysis / Gluconeogenesis | map00010 | |||
| Pentose phosphate pathway | map00030 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000946s00037886.1 | PF00171.17 | Aldedh | 26 | 138 | 1.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.329 |
| SRR1783600 | control | 5.262 |
| SRR1783602 | moderate drought stress | 3.778 |
| SRR1811619 | moderate drought stress | 5.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.954 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.159 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.432 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.645 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.749 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.678 |
| SRR2868004 | Drought Stress (root) | 0.288 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.520 |
| SRR9715740 | Leaf | 1.948 |
| SRR9715741 | Leaf | 7.131 |
| SRR9715739 | Root | 0.241 |
| SRR9715742 | Root | 1.318 |
| SRR9715743 | Root | 1.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.037 |
| SRR8749028 | MeJA induced 9h | 0.018 |
| SRR8749029 | MeJA induced 9h | 0.016 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.565 |
| SRR8400027 | Control - Root | 8.172 |