Gene detail

Gene detail information of Glyur000945s00028139

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31710.1	0	Copper amine oxidase family protein
NR	KEH32232.1	0	copper amine oxidase, enzyme domain protein [Medicago truncatula]
COG	YP_005086886.1	1.00E-104	tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q43077\|AMO_PEA	0	Primary amine oxidase (Precursor)
trEMBL	tr\|A0A072URB1\|A0A072URB1_MEDTR	0	Amine oxidase {ECO:0000256\|RuleBase:RU000672}

Sequence

Transcript Sequence

>Glyur000945s00028139.1
TGTATTTAAGGGCACCTTGGGGAGCTTCCATTCGCCACAAACACACAGCGAGCTAGGGCTTGAACTAGCTTGCTAGCTCACCATGGCTTCCACCATGAAACTCACTCTTTTCTCTGTTCTCGCATTCCTCTCATTCCAAGCAGTGGTTTCCGTTACACCACTTCAATTCAAACACCCACTAGACCCATTAACCAAAGAAGAAATAACAACCGTCCAAACCGTAGTCCTAAGCAAATACCCAACCTCAAAGAACAAGGTGGCATTCCACTACATTGGCCTAGACGACCCTGACAAAGACACCGTCCTAAAATNGAACATGAAACCAACTCTCGTAACCGTCCCTCGAAAATCCTTCGTCATTGCCATAATCAATGGCCAGAGCCACGAGATCACAATTGATCTAAGGCTAAGGCGCATTGTCTCTGACACCGTTTACAAGGGAAACGGTTTCCCTACACTATCCATTGAGGAACAGGGTGCTGCCATAGAGTTGCCACATAAGTACCCTCCTTTCATTGCTTCGGTGAACAAGAGAGGGTTGAACCTTTCTGAGGTGGTGTGTTCCGCTTTCACCATGGGTTGGTTTGGTGAGGCCAAGAGCAGAAGGACCGTGAGGCTCGATTGCTTCATGAAAGAAACCACACCCAATATCTGGGTTAGGCCCATTACTGGAATCACCATAGTGGTTGATCTTGACCTTAACAAGATTGTTGAGTACCATGATNGAGAAGTGGAAGCGGTACCCACNGCAGAGAATACCGAATACCGGGCTACACTTCAGAACCCACCGTTTGGTCCAAAACAGCACAGTCTTGCCACCCATCAACCACAAGGTCCTGGGTTCAAGATCGACGGCCACAGTGTTAGCTGGGCCAACTGGAAGTTCCATATAGGATTTGACGTACGAGCCGGTGTTATAATATCATTGGCTTCCATTTACGATCTAGATAAGCACAAGTCTCGTCGAGTGCTGTACAAAGGGTACGTTTCGGAGTTGTTCGTGCCATACCAAGACCCAACGGAAGAGTTCTACTTCAAGACCTTCTTTGATGCCGGAGAGTTTGGGTTTGGTCTTTCTACGGTCCCTTTGATCCCCAACCGCGATTGCCCACCAAATGCTCAGTTCATAGATACATTCATTCACACGGGTGATGGTAGCCCAAGCCCCTTGAAGAACGCCGTTTGTGTGTTTGAACAATATGGCAGTATCATGTGGCGTCACACAGAAACTGGCATTCCCAATGACTTCCTGGAGGAATCAAGAAATGAAGTGAACTTGATCGTGAGGACGATAGTCACCGTGGGAAACTACGACAATATTATAGATTGGGAGTTTAAAGCAAGTGGCTCGATTAAGTCCGCGATAGCACTATCGGGTATACTGGAAATTAAGGGGTCGAATATTAAGCACACTGATGAGATTAAGGAAGAACAACACGGTANCTTGGTGTCCGAAAACAGCATTGCCGTTTACCACGACCACTTCTACATTTACTATCTTGACCTTGACATCGACGGTAAAGACAACTCGTTCGAGAAGACCAATTTGAAGACCGTTAGANTAACCGATGGAAGTTCAAAGAGGAAGAGCTATTGGACAGTTGAGAAAGAAACCGCCAAGACAGAATCAGATGCAAAGATCATAATTGGNACAGCCCCAGGTGAGCTGGCAGTGGTGAATCCTAACAAGAAAACCGCCGTTGGAAACGACGTCGGATACCGTTTGATACCAGCAATCCCAGCACACCCACTTCTAACGNAGGATGACTACCCTCAAATACGTGGTGCTTTTACCAACTTCAATGTGTGGGTCACCCCTTACAATAGGACTGAGAAGTGGGCCGGTGGGCTTTTTGTGGATCACAGCCATGGAGATGATACTCTAGCTGTTTGGACCAAAAAGAATAGAGACATTAAGAACAAGGACATTGTGATGTGGCACGTGGTGGGAATTCATCATGTTCCGGCACAGGAGGACTTCCCCATAATGCCGTTGTTGAGCACTGCATTTGAGCTGAGGCCAACCAATTTCTTCGAGAGGAATCCGGTGCTTAAAACCCTTTCTCCAAGAGATGTTAAATGGCCTGGTTGCCCCAAGTAAAACTAGTCTCTCGGCTTTTGATTTGCATTATTAGCATTGATATGCTACAAGTGTTACCACATTGTTATTCGGGAAAGTGTGAATGTTGTTTGTTTGTTGCATGTGGGAGAATAATGGCATAATGTCTATCGCCAGGAACTAATTTTTATATGAATGAAAGTTTACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00945	83478	87206	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00276	AOC3, AOC2, tynA	EC:1.4.3.21	Glycine, serine and threonine metabolism	map00260
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			beta-Alanine metabolism	map00410
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0009308 amine metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0008131 primary amine oxidase activity

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000945s00028139.1	PF02727.11	Cu_amine_oxidN2	31	116	3.00E-25
Glyur000945s00028139.1	PF02728.11	Cu_amine_oxidN3	124	220	4.90E-26
Glyur000945s00028139.1	PF01179.15	Cu_amine_oxid	246	660	1.40E-134

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	557.982
SRR1783600	control	557.576
SRR1783602	moderate drought stress	137.380
SRR1811619	moderate drought stress	135.176

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	359.128
DRR006520	Root Summer glycyrrhizin high producing strain	353.552
DRR006521	Root Winter glycyrrhizin high producing strain	2.303
DRR006522	Root Winter glycyrrhizin high producing strain	2.106
DRR006523	Root Summer glycyrrhizin low producing strain	20.231
DRR006524	Root Summer glycyrrhizin low producing strain	19.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.906
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1697.952
SRR2868004	Drought Stress (root)	550.886
SRR2967015	Control (root)	875.809

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.481
SRR9715740	Leaf	0.566
SRR9715741	Leaf	20.135
SRR9715739	Root	407.346
SRR9715742	Root	596.128
SRR9715743	Root	558.968

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.661
SRR8749028	MeJA induced 9h	17.384
SRR8749029	MeJA induced 9h	20.904
SRR8749030	Uninduced	9.128
SRR8749031	Uninduced	20.748
SRR8749032	Uninduced	91.498

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	288.992
SRR8400027	Control - Root	197.930