Gene detail

Gene detail information of Glyur000945s00028122.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18930.1	4.00E-121	Adenosylmethionine decarboxylase family protein
NR	XP_003528663.1	0	PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Glycine max]
Swissprot	tr\|Q3E9D5\|DCAM4_ARATH	4.00E-150	S-adenosylmethionine decarboxylase 1 beta chain {ECO:0000250\|UniProtKB:P17707} (Precursor)
trEMBL	tr\|I1KN62\|I1KN62_SOYBN	0	S-adenosylmethionine decarboxylase proenzyme {ECO:0000256\|PIRNR:PIRNR001355}

Sequence

Transcript Sequence

>Glyur000945s00028122.1
ATGGCTGTCTCAGGTTTTGAAGGGTTCGAGAAACGCTTGGAGCTCCACTTCTTCGGCGACGATCCAGCCATATTCCAACTGGGTCTGAGGAGGCTTGAATTTGAATCACTAGAACAGGTCTTAGAAGCCGTGCAATGCACGGTGGTTTCAGCCGTTGGAAACTCATACTTCGACGCCTACGTGTTATCAGAATCGAGCCTTTTCGTTTACCCAACAAAGATCATCATCAAGACCTGCGGAACAACCCAACTCCTCAAATCAATCCCTCCCCTGATCCACTACGCACAACACTACTTAGGCCTCACCCTATGCTCTGTCCGCTACACCAGAGGAAGCTTCATCTTCCCAAAGGCACAACCTTTCCCTCACACAAGCTTCAACGACGAAGTTACCTACTTGGAAAACACCATCCCACAAAACCTTTGCTTCAGAAAAGCCTCAATCATGCCCTCAAAATCCTCTTCTCACTCTTGGCATGTCTTTACGGCATACTCTCAAACACCTTATGGGCATGTCGTCGACGACAGTGTCAGTGACGTNTTCACCATGGAGATCTGCATGACGGAGCTCGACCCAGTCTTAGCTCGGAAATTCTTCCGGCGACCGGAAGATGGAAAAACCGGCGACTCTGCCGGAAAGGAAATGACGGAGCTCACGGGGATCAATGAGATAAACCCCGAGGCTCTGATTTGTGACTTCGCGTTTGACCCTTGTGGGTATTCGATGAATGGCATGGATGGGGATTGGTACTCCACCATCCACGTCACCCCAGAGGACGGTTTCAGCTACGCGAGCTTCGAGTGCGTCGCTTCAGTTAACGACGACATTGTCCACGTGTTGAGGAAGGTGGTTCAGATTTTCCGTCCGGGAACTATGTCCATTTCAACGACGTCGTTTAGTGGCTACGGGAATATTGAGATGTGGACGCAGATATTGGCGGGTGCAGTGGAACCTCTGGGGTTGAAATGCAGGAGCTGTGCGTTGGACCAGTTCCCGGCGGCGGGTTCTGTTGTCTTTCAAACGTTCACCCCTCGCCGGAAAAGTATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00945	15438	16487	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01611	speD, AMD1	EC:4.1.1.50	Cysteine and methionine metabolism	map00270
			Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006597 spermine biosynthetic process

GO:0008295 spermidine biosynthetic process

molecular_function
GO:0004014 adenosylmethionine decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000945s00028122.1	PF01536.11	SAM_decarbox	4	299	3.50E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.011
SRR1783600	control	0.991
SRR1783602	moderate drought stress	1.424
SRR1811619	moderate drought stress	1.479

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.441
DRR006520	Root Summer glycyrrhizin high producing strain	1.826
DRR006521	Root Winter glycyrrhizin high producing strain	0.128
DRR006522	Root Winter glycyrrhizin high producing strain	0.275
DRR006523	Root Summer glycyrrhizin low producing strain	1.934
DRR006524	Root Summer glycyrrhizin low producing strain	1.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.618

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.212
SRR2868004	Drought Stress (root)	3.999
SRR2967015	Control (root)	4.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.239
SRR9715740	Leaf	0.721
SRR9715741	Leaf	0.507
SRR9715739	Root	1.946
SRR9715742	Root	1.342
SRR9715743	Root	1.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.713
SRR8749028	MeJA induced 9h	1.535
SRR8749029	MeJA induced 9h	1.330
SRR8749030	Uninduced	0.207
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.217

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.070
SRR8400027	Control - Root	2.623