Gene detail information of Glyur000945s00028120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06270.1 | 3.00E-141 | Protein phosphatase 2C family protein |
| NR | XP_003529598.1 | 0 | PREDICTED: probable protein phosphatase 2C 35 isoform X1 [Glycine max] |
| Swissprot | tr|Q7XJ53|P2C35_ARATH | 3.00E-177 | Probable protein phosphatase 2C 35 |
| trEMBL | tr|I1KN61|I1KN61_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G38410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00945 | 7200 | 10169 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000945s00028120.1 | PF00481.16 | PP2C | 70 | 320 | 1.20E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.215 |
| SRR1783600 | control | 8.192 |
| SRR1783602 | moderate drought stress | 6.006 |
| SRR1811619 | moderate drought stress | 5.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.979 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.708 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.867 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.715 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.442 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.496 |
| SRR2868004 | Drought Stress (root) | 14.975 |
| SRR2967015 | Control (root) | 16.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.434 |
| SRR9715740 | Leaf | 11.781 |
| SRR9715741 | Leaf | 12.076 |
| SRR9715739 | Root | 11.178 |
| SRR9715742 | Root | 18.237 |
| SRR9715743 | Root | 18.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.484 |
| SRR8749028 | MeJA induced 9h | 6.410 |
| SRR8749029 | MeJA induced 9h | 4.643 |
| SRR8749030 | Uninduced | 2.777 |
| SRR8749031 | Uninduced | 3.263 |
| SRR8749032 | Uninduced | 3.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.004 |
| SRR8400027 | Control - Root | 26.322 |