Gene detail

Gene detail information of Glyur000942s00027145

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59990.4	9.00E-171	methionine aminopeptidase 2B
NR	XP_007142586.1	0	hypothetical protein PHAVU_007G000100g [Phaseolus vulgaris]
COG	YP_256126.1	5.00E-38	methionine aminopeptidase [Sulfolobus acidocaldarius DSM 639]
Swissprot	tr\|Q56Y85\|MAP22_ARATH	0	Methionine aminopeptidase 2B {ECO:0000255\|HAMAP-Rule:MF_03175}
trEMBL	tr\|V7BAG7\|V7BAG7_PHAVU	0	Methionine aminopeptidase 2 {ECO:0000256\|HAMAP-Rule:MF_03175}

Sequence

Transcript Sequence

>Glyur000942s00027145.1
ATGCAGAGTAGCAATTGTTCCCCTCATTTGACACCTCAGGTTCCCCTCAGGTCAGACACCACGCTCTTTCTGGCCAAGCGACGAAGTGAACTTTTCGCCTTTTTCATCAGAAAGCAGCAAAGTCTTTGTGCCGTCGCGGACAAGCTGGAAGAAAATGGAACTTTGGAGCCTCCAAGTCACGTAGAAGGGGCTGGTGAGATTTCTCCACCATCACAAAAAGAGGAAGATAATGGTAAAGAAGTTCCAAAGAAGAAAAAGAAGAAAGCTAAAAGCAAGAAAAAGAAAGAACTCGTTCAGCAGACTGATCCACCATCAATTCCTGTTCTTGATCTTTATCCATCTGGAGATTTTCCAGAAGGTGAAATTCAGCAGTACAAAGATGATAACCTATGGAGAACTACATCAGAGGAGAAGAGAGAGATGGAGCGCCTTCAGAAACCATTATATAATTCAGTTCGCAAGTATATGAAAGGCATTTTAAAGCCTGGAATGCTGATGACTGACTTATGTGAAACATTGGAGAACACGTATGATGATGTAATGAAGTTGGATTTTGGCACCCATGTAGATGGATATATAGTTGACTGTGCTTTTACCGTGGCATTCAACCCAATGTTTGATCCACTGCTTGAAGCCTCTCGTGAAGCTACCAATACGGGTATTAAGGAAGCTGGAATCGATGTGCGCCTTTGTGATGTTGGTGCCGCAATTCAAGAGGTCATGGAGTCTTATGAGGTTGAGATTAATGGGAAGGTGTATCAAGTTAAAAGTATACGGAATTTGAATGGACATAGCATAGGCCGCTACCAAATCCATGCTGGAAAATCGGTTCCCATCGTCAAAGGTGGAGAGCAGACAAAGATGGAAGAGGGTGAATTTTATGCTATTGAAACCTTTGCATCAACTGGGAAGGGATATGTACGAGAAGACCTGGAATGCAGCCACTATATGAAAAATTTTGACGTTGGTCATATCCCGCTGAGATTGCCTAGAGCTAAGCAACTGTTAGCTACCATTAACAAGAACTTCTCTACTTTGGCCTTTTGTAGACGATATTTAGATCGTCTAGGAGAGACTAAATACTTAATGGCATTGAAGAACCTGTGTGACTCTGGCATTGTTCAGCCTTATCCTCCTCTATGCGACGTGAAAGGGAGCTATGTATCACAGTTTGAACATACAATCCTACTCCGACCAACATGCAAAGAAGTTATATCTAAGGGTGATGATTACTAATGCGAACTTTTAGTGGTATTTTGTTGATGGATACACATCGTACCTTTTTNATTTGTATAAACTGTTATTCACCGTACTATCAACACTTTTGTTTTATAACTGAAGGTATGCCTTCCGAGTTTGACATTACTCGTTTAATAATTGGCCATACGTGTCCANAGAATATACTCCTTGACGAAAATTACAAAGCGCTTGTTTCAGATATTGGTCTCTAAAAAATNGTTCAGAACGCAATACGTGTCCACAGGGGAGTGTTTCTTCTCTCCTAATTCCCCTTTCTTCCACACCTTAATTCTCTTATTCACTGATCCAGTGCAAACATACCTATCCTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00942	64392	75652	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004177 aminopeptidase activity

GO:0008235 metalloexopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000942s00027145.1	PF00557.19	Peptidase_M24	177	398	2.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	95.218
SRR1783600	control	95.106
SRR1783602	moderate drought stress	111.375
SRR1811619	moderate drought stress	110.226

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	85.844
DRR006520	Root Summer glycyrrhizin high producing strain	85.237
DRR006521	Root Winter glycyrrhizin high producing strain	210.328
DRR006522	Root Winter glycyrrhizin high producing strain	201.672
DRR006523	Root Summer glycyrrhizin low producing strain	111.994
DRR006524	Root Summer glycyrrhizin low producing strain	111.837
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.482

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	127.643
SRR2868004	Drought Stress (root)	137.960
SRR2967015	Control (root)	131.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	77.412
SRR9715740	Leaf	79.128
SRR9715741	Leaf	95.524
SRR9715739	Root	18.505
SRR9715742	Root	55.474
SRR9715743	Root	52.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	237.777
SRR8749028	MeJA induced 9h	193.383
SRR8749029	MeJA induced 9h	238.594
SRR8749030	Uninduced	297.092
SRR8749031	Uninduced	440.002
SRR8749032	Uninduced	393.853

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	103.467
SRR8400027	Control - Root	85.427