Gene detail information of Glyur000942s00027141 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16830.1 | 7.00E-86 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_006601680.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830-like [Glycine max] |
| Swissprot | tr|Q3EDA9|PPR46_ARATH | 3.00E-103 | Putative pentatricopeptide repeat-containing protein At1g16830 |
| trEMBL | tr|I1MX16|I1MX16_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00942 | 28817 | 30742 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000942s00027141.1 | PF13812.1 | PPR_3 | 143 | 167 | 0.51 |
| Glyur000942s00027141.1 | PF13041.1 | PPR_2 | 247 | 290 | 1.00E-12 |
| Glyur000942s00027141.1 | PF13041.1 | PPR_2 | 313 | 361 | 1.10E-09 |
| Glyur000942s00027141.1 | PF13041.1 | PPR_2 | 382 | 429 | 5.00E-11 |
| Glyur000942s00027141.1 | PF13041.1 | PPR_2 | 487 | 535 | 5.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.206 |
| SRR1783600 | control | 2.151 |
| SRR1783602 | moderate drought stress | 6.364 |
| SRR1811619 | moderate drought stress | 6.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.483 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.488 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.750 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.758 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.719 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.455 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.606 |
| SRR2868004 | Drought Stress (root) | 5.703 |
| SRR2967015 | Control (root) | 5.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.425 |
| SRR9715740 | Leaf | 1.291 |
| SRR9715741 | Leaf | 1.989 |
| SRR9715739 | Root | 0.830 |
| SRR9715742 | Root | 2.125 |
| SRR9715743 | Root | 2.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.186 |
| SRR8749028 | MeJA induced 9h | 4.721 |
| SRR8749029 | MeJA induced 9h | 1.105 |
| SRR8749030 | Uninduced | 0.671 |
| SRR8749031 | Uninduced | 1.058 |
| SRR8749032 | Uninduced | 0.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.963 |
| SRR8400027 | Control - Root | 5.359 |