Gene detail information of Glyur000940s00031350 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01410.2 | 1.00E-04 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_004514910.1 | 4.43E-12 | PREDICTED: putative ribonuclease H protein At1g65750-like [Cicer arietinum] |
| COG | YP_004102881.1 | 8.00E-07 | ribonuclease H [Thermaerobacter marianensis DSM 12885] |
| trEMBL | tr|A2Q681|A2Q681_MEDTR | 8.00E-10 | Ribonuclease H {ECO:0000313|EMBL:ABN09101.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00940 | 77324 | 83869 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000940s00031350.1 | PF13456.1 | RVT_3 | 209 | 243 | 6.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.029 |
| SRR1783600 | control | 0.562 |
| SRR1783602 | moderate drought stress | 5.403 |
| SRR1811619 | moderate drought stress | 4.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.881 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.035 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.688 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.871 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.449 |
| SRR2868004 | Drought Stress (root) | 0.332 |
| SRR2967015 | Control (root) | 0.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.104 |
| SRR9715740 | Leaf | 3.219 |
| SRR9715741 | Leaf | 1.099 |
| SRR9715739 | Root | 0.782 |
| SRR9715742 | Root | 0.264 |
| SRR9715743 | Root | 0.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.520 |
| SRR8749028 | MeJA induced 9h | 0.062 |
| SRR8749029 | MeJA induced 9h | 0.171 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.731 |
| SRR8400027 | Control - Root | 1.745 |