Gene detail information of Glyur000940s00031347


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G60170.13.00E-145pre-mRNA processing ribonucleoprotein binding region-containing protein
NRXP_004491743.10PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like isoform X1 [Cicer arietinum]
COGYP_008431969.17.00E-26hypothetical protein N186_02900 [Thermofilum sp. 1910b]
Swissprottr|Q9MAB3|NOP5B_ARATH2.00E-26Probable nucleolar protein 5-2
trEMBLtr|I1N7K6|I1N7K6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G24310.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold009403503447899-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0000244  spliceosomal tri-snRNP complex assembly

GO:0000398  mRNA splicing, via spliceosome


cellular_component

GO:0046540  U4/U6 x U5 tri-snRNP complex



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000940s00031347.1PF08060.8NOSIC1361882.00E-21
Glyur000940s00031347.1PF01798.13Nop2303757.50E-46
Glyur000940s00031347.1PF09785.4Prp31_C3784722.80E-26
Glyur000940s00031347.2PF08060.8NOSIC1361881.80E-21
Glyur000940s00031347.2PF01798.13Nop2303756.60E-46
Glyur000940s00031347.2PF09785.4Prp31_C3784311.30E-23
Glyur000940s00031347.3PF08060.8NOSIC1361881.80E-21
Glyur000940s00031347.3PF01798.13Nop2303756.40E-46
Glyur000940s00031347.3PF09785.4Prp31_C3784331.10E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.844
SRR1783600control17.822
SRR1783602moderate drought stress24.278
SRR1811619moderate drought stress24.139

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.799
DRR006520Root Summer glycyrrhizin high producing strain37.670
DRR006521Root Winter glycyrrhizin high producing strain75.187
DRR006522Root Winter glycyrrhizin high producing strain75.103
DRR006523Root Summer glycyrrhizin low producing strain26.319
DRR006524Root Summer glycyrrhizin low producing strain26.940
DRR006525Leaf Summer glycyrrhizin high producing strain14.707
DRR006526Leaf Summer glycyrrhizin high producing strain14.618

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)35.453
SRR2868004Drought Stress (root)31.509
SRR2967015Control (root)32.054

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf23.555
SRR9715740Leaf31.869
SRR9715741Leaf26.677
SRR9715739Root15.473
SRR9715742Root24.916
SRR9715743Root23.997

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h76.599
SRR8749028MeJA induced 9h48.840
SRR8749029MeJA induced 9h61.818
SRR8749030Uninduced37.512
SRR8749031Uninduced33.011
SRR8749032Uninduced39.328

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root34.386
SRR8400027Control - Root32.855

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved