Gene detail information of Glyur000939s00023559.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16600.1 | 0 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_004508902.1 | 0 | PREDICTED: putative glucuronosyltransferase PGSIP8-like [Cicer arietinum] |
| COG | YP_002525241.1 | 4.00E-12 | glycosyl transferase family protein [Rhodobacter sphaeroides KD131] |
| Swissprot | tr|F4JMI5|GUX7_ARATH | 0 | Putative glucuronosyltransferase PGSIP7 |
| trEMBL | tr|K7MLK8|K7MLK8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G15060.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00939 | 97397 | 102934 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000939s00023559.1 | PF01501.15 | Glyco_transf_8 | 53 | 272 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.429 |
| SRR1783600 | control | 10.540 |
| SRR1783602 | moderate drought stress | 14.499 |
| SRR1811619 | moderate drought stress | 14.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.159 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 56.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 54.550 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.669 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.086 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.347 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.008 |
| SRR2868004 | Drought Stress (root) | 9.876 |
| SRR2967015 | Control (root) | 30.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.899 |
| SRR9715740 | Leaf | 2.763 |
| SRR9715741 | Leaf | 3.343 |
| SRR9715739 | Root | 9.740 |
| SRR9715742 | Root | 16.231 |
| SRR9715743 | Root | 14.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.220 |
| SRR8749028 | MeJA induced 9h | 4.801 |
| SRR8749029 | MeJA induced 9h | 3.697 |
| SRR8749030 | Uninduced | 3.117 |
| SRR8749031 | Uninduced | 0.148 |
| SRR8749032 | Uninduced | 1.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.349 |
| SRR8400027 | Control - Root | 15.008 |