Gene detail information of Glyur000939s00023555 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16563.1 | 4.00E-114 | Eukaryotic aspartyl protease family protein |
| NR | XP_003549914.1 | 0 | PREDICTED: aspartic proteinase nepenthesin-1 [Glycine max] |
| Swissprot | tr|Q766C2|NEP2_NEPGR | 4.00E-29 | Aspartic proteinase nepenthesin-2 (Precursor) |
| trEMBL | tr|K7KN38|K7KN38_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04590.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00939 | 68131 | 69288 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000939s00023555.1 | PF14543.1 | TAXi_N | 1 | 168 | 1.80E-23 |
| Glyur000939s00023555.1 | PF14541.1 | TAXi_C | 200 | 370 | 2.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.041 |
| SRR1783600 | control | 54.647 |
| SRR1783602 | moderate drought stress | 333.969 |
| SRR1811619 | moderate drought stress | 274.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.659 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2291.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2248.162 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 88.801 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 88.868 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.423 |
| SRR2868004 | Drought Stress (root) | 8.658 |
| SRR2967015 | Control (root) | 18.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.001 |
| SRR9715740 | Leaf | 14.132 |
| SRR9715741 | Leaf | 10.065 |
| SRR9715739 | Root | 183.956 |
| SRR9715742 | Root | 147.968 |
| SRR9715743 | Root | 150.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 376.031 |
| SRR8749028 | MeJA induced 9h | 549.468 |
| SRR8749029 | MeJA induced 9h | 467.073 |
| SRR8749030 | Uninduced | 16.609 |
| SRR8749031 | Uninduced | 5.366 |
| SRR8749032 | Uninduced | 60.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.977 |
| SRR8400027 | Control - Root | 30.364 |