Gene detail information of Glyur000939s00023544 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16520.2 | 8.00E-59 | Ubiquitin-like superfamily protein |
| NR | XP_003608728.1 | 1.26E-80 | Autophagy-related protein 8f [Medicago truncatula] |
| Swissprot | tr|Q8VYK7|ATG8F_ARATH | 9.00E-75 | Autophagy-related protein 8f (Precursor) |
| trEMBL | tr|G7JIY2|G7JIY2_MEDTR | 5.00E-81 | Autophagy-related protein {ECO:0000256|RuleBase:RU004384} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00939 | 27731 | 30834 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000939s00023544.1 | PF02991.11 | Atg8 | 14 | 117 | 1.80E-50 |
| Glyur000939s00023544.2 | PF02991.11 | Atg8 | 14 | 117 | 1.80E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 79.114 |
| SRR1783600 | control | 78.133 |
| SRR1783602 | moderate drought stress | 58.685 |
| SRR1811619 | moderate drought stress | 58.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 149.242 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 147.655 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 115.600 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 111.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 149.271 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 149.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.004 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 79.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 190.717 |
| SRR2868004 | Drought Stress (root) | 266.874 |
| SRR2967015 | Control (root) | 233.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.647 |
| SRR9715740 | Leaf | 116.168 |
| SRR9715741 | Leaf | 114.691 |
| SRR9715739 | Root | 25.080 |
| SRR9715742 | Root | 45.949 |
| SRR9715743 | Root | 36.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 121.335 |
| SRR8749028 | MeJA induced 9h | 131.997 |
| SRR8749029 | MeJA induced 9h | 144.824 |
| SRR8749030 | Uninduced | 300.039 |
| SRR8749031 | Uninduced | 342.729 |
| SRR8749032 | Uninduced | 392.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 161.463 |
| SRR8400027 | Control - Root | 155.662 |