Gene detail

Gene detail information of Glyur000939s00023542.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17260.1	2.00E-156	Lactate/malate dehydrogenase family protein
NR	XP_003608731.1	0	L-lactate dehydrogenase [Medicago truncatula]
COG	YP_003889602.1	6.00E-89	L-lactate dehydrogenase [Cyanothece sp. PCC 7822]
Swissprot	tr\|P22988\|LDHA_HORVU	7.00E-169	L-lactate dehydrogenase A
trEMBL	tr\|G7JIY5\|G7JIY5_MEDTR	0	L-lactate dehydrogenase {ECO:0000256\|RuleBase:RU000496}

Sequence

Transcript Sequence

>Glyur000939s00023542.1
CGTTTANGCTGAACAGACCAAAAGAGTCCATCTTCATTCAAAGTTTCATACCGTTCTTCTTCTTTCCTCCCACACAGACCACAGTATTAGCACAACATTATTCTGCACTGCAGTGCTGTATTTTATTACCACTCAGAACTCAGAAGAGAACAGGCAAATAAACTCTGCAAGTAACAGCAACAAATCATCAATCACATCATGCACAAGAGCGCTTCAGGATCGACGTTGGGCCCAGGGGGCCTGGACCTAACACAGGCCTTCTTCAAGCCCATAATGAACGCGGCCCCTCCGTCTCCCACGAAGCGACACAACAAGATCTCGGTGATCGGCGCCGGAAACGTGGGAATGGCCATTGCACAGACCATCCTCACCCAGGACCTCACCGACGAGCTCGTCATCGTCGACAAGCAGCCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCTTTCCTCCCTCGCGTCAGGATCAACTCCTCCGTCGACTACGAAGTCACCGTCGGCTCCGATCTCTGCATCGTCACCGCCGGAGCACGCCAGATCGCCGGCGAGTCCAGGCTCAACCTGCTCCAGAGAAACGTCAACCTCTTCCGCCACATCATACCCCCTCTGGCCCGTTACTCACCGGACTCTGTCCTCCTCATCGTTTCTAACCCCGTCGATGTCCTCACCTACGTCGCTTGGAAGCTCTCTGGGTTCCCCTCCAACCGGGTCATCGGGTCGGGTACCAACTTGGACTCGTCTCGTTTTCGTTTCCTCATTGCCGATCATCTCGACGTCAACGCTCAGGATGTACAGGCATACATAGTGGGGGAGCACGGGGATAGTTCGGTGGCGCTGTGGTCAAGCATTAGCGTAGGGGGTGTTCCGGTGTTGAGTTTTCTGAAGAATCAGCAGATAGCGTATGAGAAGGAAACGCTGGAGAACATACACAAGAGAGTGATAGACAGCGCTTACGAAGTGATCAGTCTGAAGGGCTACACTTCATGGGCCATTGGGTACTCGGTGGCTAGCTTGGCCCGGTCCATTATTAGGGACCAAAGGAAGATCCACCCCGTGTCTGTTATGGCGAAGGGGTTTTATGGCATCGGTGATGATGTGGAAGTGTTTCTGAGCTTGCCGGCACAGCTGGGTAGAGGAGGGGTCCTGGGTGTGACCAACGTGCACATGAACCAAGAGGAGGAGCGAAGGCTCAGGGACTCTGCCAAAACCATCATGGAGTTCCAGACTCAGTTGGGTNTTTGAATATTGAATTGCTATGAATTGATTTGTACCTCTTGCACTCACTTGTGATTTTGTCCTTTAATTCTCTCATGCTTTTTCTTCCATCGTTATGTGGTTCCGGCCTAAATTATCACTTGTTACTGTTAGGCCCTTGCACTACAAGTGTTTTTGTTTACTATTTGCTTGCACCCTCAGTGGTAGCTTGATCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00939	17741	20892	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00016	LDH, ldh	EC:1.1.1.27	Glycolysis / Gluconeogenesis	map00010
			Pyruvate metabolism	map00620
			Propanoate metabolism	map00640
			Cysteine and methionine metabolism	map00270
			Glucagon signaling pathway	map04922

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0019752 carboxylic acid metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0004459 L-lactate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000939s00023542.1	PF00056.18	Ldh_1_N	38	177	1.10E-42
Glyur000939s00023542.1	PF02866.13	Ldh_1_C	180	343	4.80E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.096
SRR1783600	control	50.461
SRR1783602	moderate drought stress	26.035
SRR1811619	moderate drought stress	26.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.654
DRR006520	Root Summer glycyrrhizin high producing strain	15.520
DRR006521	Root Winter glycyrrhizin high producing strain	4.095
DRR006522	Root Winter glycyrrhizin high producing strain	3.930
DRR006523	Root Summer glycyrrhizin low producing strain	5.062
DRR006524	Root Summer glycyrrhizin low producing strain	5.318
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.760
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.858

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.611
SRR2868004	Drought Stress (root)	49.209
SRR2967015	Control (root)	53.225

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.875
SRR9715740	Leaf	3.662
SRR9715741	Leaf	6.102
SRR9715739	Root	55.344
SRR9715742	Root	26.427
SRR9715743	Root	32.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.371
SRR8749028	MeJA induced 9h	40.985
SRR8749029	MeJA induced 9h	29.620
SRR8749030	Uninduced	22.347
SRR8749031	Uninduced	7.751
SRR8749032	Uninduced	19.324

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.790
SRR8400027	Control - Root	44.778