Gene detail information of Glyur000939s00023540 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45180.1 | 4.00E-33 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK47547.1 | 4.76E-60 | unknown [Lotus japonicus] |
| Swissprot | tr|P14009|14KD_DAUCA | 2.00E-34 | 14 kDa proline-rich protein DC2.15 (Precursor) |
| trEMBL | tr|I3T4V5|I3T4V5_LOTJA | 2.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:AFK47547.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00939 | 2798 | 8643 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000939s00023540.1 | PF14547.1 | Hydrophob_seed | 55 | 135 | 1.10E-28 |
| Glyur000939s00023540.1 | PF14547.1 | Hydrophob_seed | 238 | 320 | 1.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.162 |
| SRR1783600 | control | 2.098 |
| SRR1783602 | moderate drought stress | 4.887 |
| SRR1811619 | moderate drought stress | 5.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.130 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.011 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 480.018 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 467.015 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.860 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.859 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.333 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 386.731 |
| SRR2868004 | Drought Stress (root) | 127.467 |
| SRR2967015 | Control (root) | 118.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 86.830 |
| SRR9715740 | Leaf | 20.459 |
| SRR9715741 | Leaf | 112.961 |
| SRR9715739 | Root | 0.034 |
| SRR9715742 | Root | 0.303 |
| SRR9715743 | Root | 0.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1390.839 |
| SRR8749028 | MeJA induced 9h | 1201.563 |
| SRR8749029 | MeJA induced 9h | 1603.728 |
| SRR8749030 | Uninduced | 80.114 |
| SRR8749031 | Uninduced | 49.269 |
| SRR8749032 | Uninduced | 178.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.549 |
| SRR8400027 | Control - Root | 12.774 |