Gene detail information of Glyur000937s00031577 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74350.1 | 0 | Intron maturase, type II family protein |
| NR | XP_006600812.1 | 0 | PREDICTED: uncharacterized protein LOC100784683 isoform X2 [Glycine max] |
| COG | YP_001632901.1 | 3.00E-20 | hypothetical protein Bpet4285 [Bordetella petrii DSM 12804] |
| trEMBL | tr|K7MLH5|K7MLH5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G14431.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00937 | 66842 | 69796 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000937s00031577.1 | PF00078.22 | RVT_1 | 185 | 430 | 5.90E-20 |
| Glyur000937s00031577.1 | PF01348.16 | Intron_maturas2 | 589 | 711 | 1.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.813 |
| SRR1783600 | control | 3.822 |
| SRR1783602 | moderate drought stress | 4.715 |
| SRR1811619 | moderate drought stress | 4.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.030 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.917 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.779 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.795 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.014 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.736 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.304 |
| SRR2868004 | Drought Stress (root) | 5.902 |
| SRR2967015 | Control (root) | 5.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.383 |
| SRR9715740 | Leaf | 3.921 |
| SRR9715741 | Leaf | 2.506 |
| SRR9715739 | Root | 0.530 |
| SRR9715742 | Root | 2.461 |
| SRR9715743 | Root | 2.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.872 |
| SRR8749028 | MeJA induced 9h | 3.991 |
| SRR8749029 | MeJA induced 9h | 1.253 |
| SRR8749030 | Uninduced | 2.216 |
| SRR8749031 | Uninduced | 1.076 |
| SRR8749032 | Uninduced | 0.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.239 |
| SRR8400027 | Control - Root | 8.148 |