Gene detail

Gene detail information of Glyur000937s00031573

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74320.1	2.00E-143	Protein kinase superfamily protein
NR	XP_003598417.1	0	Choline/ethanolamine kinase [Medicago truncatula]
COG	YP_007206764.1	4.00E-11	choline kinase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q8L518\|CK2_ARATH	2.00E-177	Probable choline kinase 2
trEMBL	tr\|G7IVT5\|G7IVT5_MEDTR	0	Choline/ethanolamine kinase {ECO:0000313\|EMBL:AES68668.1}

Sequence

Transcript Sequence

>Glyur000937s00031573.1
AATAGTTGCACCTTGCAGTAGTCACCACCGTTGCTCATTGGACACATTGGCGGTGGAAAAGAAACCCCTTTCCTTCATCATATAAATATATCAACCTCATTGCATTCCCTCAAACCGCTTAACCGTCACTGTTCCTCTCTTTCAATCATTCATTTGCATTCTCTTTCTCTAAACGACGCCATCTTTGAGTTCTGACCTCGCCGGCGGCGATATCTCCGACCGCCGCCTCGCGGTTCTCATCTGAGTCGTCCGTTCGTTGGCTTCAGATTCTTTTCGCGTCGTTGGATTTGCATCCAAAACTATCCGTTGCGGTATTGAAGTTATAAATAAAGGAAACTTGATATTTCCAGTAAATCCTTGCTGTGCTTGGAATTTTGGATTCTTTCACAATGGGTACAGGTGAAGATCTTGTAAACAATGCAGCTGGTGCTGCAGAGATTCCTGTAAACCACACCATAGGAGATTCTTCAGAAGTTCCCGAGAAGAAAGCAAATGACCAACCAAATGTTGCTGTACATCCTGTAAACGACCAAGCAAATGTTGCAGAAATTCCGGTACATGACAAAGCTGGTGGTGCAGAAAACCCTGTTACTGACCAAGCAAATGTTGCAGAAATTCCTGTTAACGACAAAGCTGATGCTGTAGAAAATCCTTTAAATGACAAACAAGATGCTGCAGAAAATCTTGAACAAGACAAAACAGATGCTGTTGAAACCCCTGTAAGCAACAAAGCAGATCNCCTTCCAGCAGAAGCAAAAGAGATACTGGAATCTTTGGCAGGTAAATGGGAGGATGTACTTGATGCAAGTGCATTGCAAGTAATCCCTCTCAAGGGGGCAATGACAAATGAGGTCTTCCAAATAAAGTGGCCAACTATGACAGGAGAAACCTCACGAAAGGTTCTAGTTAGAATCTATGGTGAGGGTGTGGACATTTTCTTTGATAGGGGTGATGAAATCCGGACATTTGAATACATGTCAAAGAATGGGCAGGGACCTCTTCTACTGGGACGTTTTACAAATGGACGTGTTGAAGAGTTTATCCGTGCACGGACATTGTCAGCATCTGATCTACGTGATCCATCTATTTCTGCTCTTATAGCGGCCAAAATGAAGGAGTTCCATCATCTAGATATGCATGGTGAAAAGAAAGTCAACCTTTGGGATACATTGCGAAAATGGCTTGGTGAGGGCAAACGCTTGTCTTCTCCTCAAGAAGTTGAAGCTTTTTATTTGGACACAATTGACAAGGAAATCTCTATTTTGGAGAAGGAACTATCAGGCACTCACCAACTGATAGGATTTTGCCACAATGATTTACAATATGGTAACATAATGCTTGATGAAGAGACCAATTCTGTGACCATAATAGACTACGAGTATGCGAGTTATAATCCTGTAGCATATGATATAGCAAACCACTTCTGTGAGATGGCCGCTAACTATCATACAGAAAAGCCTCATATTCTTGATTATAATAAATATCCTGACTTTGAGGAGCGTCAAAGATTTGTGAAGGCATATATGAGTTCCTCGGGTGAGCAACCAAGTGACAGTGAAGTGGAGCACCTACTTCAAGAAATTGAGAAGTATACACTTGCAAATCATCTATTCTGGGGCCTTTGGGGAATAATTTCGGCACAAGTAAACAAGATCGACTTTGACTACAAGGAGTATGCGAAACAGAGGTTTCAAGAGTATTGGGCAAGGAAACCTTATCTTCTGACCACTGATGCACCTTCTCCTTATAATGTGCCTGAGGGTACAGGAGAGCTAGCGTCNGCAGCGACCACCAAAGGAACATCAAAGAACTCCGGTATCTTCAGGAAGATGAAGAGAGTTTTGGGTCTCGGCTTGTTCAAGTCGTCGAAAAGCAGCAGCAGCAGCAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00937	31728	39032	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14156	CHK	EC:2.7.1.32 2.7.1.82	Glycerophospholipid metabolism	map00564
			Choline metabolism in cancer	map05231

Gene Ontology

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000937s00031573.1	PF01633.15	Choline_kinase	168	369	3.20E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.163
SRR1783600	control	9.872
SRR1783602	moderate drought stress	10.177
SRR1811619	moderate drought stress	9.804

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.112
DRR006520	Root Summer glycyrrhizin high producing strain	9.902
DRR006521	Root Winter glycyrrhizin high producing strain	45.414
DRR006522	Root Winter glycyrrhizin high producing strain	45.013
DRR006523	Root Summer glycyrrhizin low producing strain	9.971
DRR006524	Root Summer glycyrrhizin low producing strain	10.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.248

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.677
SRR2868004	Drought Stress (root)	6.238
SRR2967015	Control (root)	5.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.759
SRR9715740	Leaf	2.923
SRR9715741	Leaf	1.338
SRR9715739	Root	1.217
SRR9715742	Root	4.529
SRR9715743	Root	4.178

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.546
SRR8749028	MeJA induced 9h	9.311
SRR8749029	MeJA induced 9h	4.165
SRR8749030	Uninduced	5.141
SRR8749031	Uninduced	2.849
SRR8749032	Uninduced	1.812

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.915
SRR8400027	Control - Root	19.439