Gene detail

Gene detail information of Glyur000936s00037098

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30060.1	1.00E-71	Pleckstrin homology (PH) domain superfamily protein
NR	XP_003556169.1	8.11E-121	PREDICTED: ran-binding protein 1 homolog a-like [Glycine max]
Swissprot	tr\|P92985\|RBP1C_ARATH	4.00E-91	Ran-binding protein 1 homolog c
trEMBL	tr\|I1NH59\|I1NH59_SOYBN	3.00E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G31070.1}

Sequence

Transcript Sequence

>Glyur000936s00037098.1
TAAAAACCCTCTTTAAGTATTAACCCCGCTCTTCCCTCTCTCTCCACATTTCAATCAACTAAGATGTCAAGCACCGACGCCGACCACCCCGAAGAGGACGATGTTCCCGCCGGCGACGACGAAGACACCGGAGCTCAGGTCGCTCCGATCGTTCAACTCGAAGAAGTCGCCGTCTCCACCGGCGAAGAGGACGAACAACCTATTCTCGACCTCAAAGCGAAACTGTACCGTTTCGATAAGGAAGGGAACCAGTGGAAGGAACGAGGCGCTGGAACCGTGAAGTTCTTAAAGCATAACGTTACCGGTAAGGTTAGGCTTCTCGTGAGGCAATCGAAGACTCTGAAGATCTGTGCCAATCATCTCATTCTGCCTCAGATGACTGTGCAAGAGCACGCTGGGAATGAGAAGTCTTGCGTTTGGCACGCGAGGGACTTCGCCGATGGTGAATTGAAAGACGAGCTTTTCTGCATTCGATTCGCATCAATCGAAAATTGCAAAAGGTTCATGGAAACATTCCAAGAAATTGCTGAATCCGAGAACAAAGAGGAAGACGAGGATGCATCTGNTGCTGCTGCTGGTCTCCTTGAGAAATTGAGTGTTGAAGGGAATGCAGATACAGAACAGAAAGATGAAGAGAAGTCCGAGGACAAAACTAGGGAGCAAGAATCTGCAACGGGAAAGGAAAGCAAGCCTGATTCAGAGAAGAAAGTTGAAGAACATGGTTCATCTGCTCGATTATAGTCCATTCATGTCTCCAACAACAAGGCAATATGACAAGGTTGGGTGGTTGACCCTTTTGGCCTCCCTTGTCAATATTCTCTCATAGTCCTATAGTCTTCAGATTCAGTCATAGCAATGCTATTGAGCAGTCGGTTTCCGTGGTCGAGTTTTTGTCAGCAAGCAAGGTTTCTTTCAGTNAGGTTTGGATCATTTGAGGTTGGGGGCTTTCAGGGTCTGGGAGTTTTCTAGTGTTGTTTTCATTCTATTCATGTATTTGTAGTGGAAATTTGAATGAGTCATATGTTGGTGTTGGAAGGGTGCAAGTCGGGAAATTGTAGAAAGTATAAACAGAAGGTTTTGGATGCAAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00936	98225	102199	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0046907 intracellular transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000936s00037098.1	PF00638.13	Ran_BP1	37	154	1.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.491
SRR1783600	control	15.348
SRR1783602	moderate drought stress	11.391
SRR1811619	moderate drought stress	11.585

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.567
DRR006520	Root Summer glycyrrhizin high producing strain	44.087
DRR006521	Root Winter glycyrrhizin high producing strain	24.821
DRR006522	Root Winter glycyrrhizin high producing strain	23.862
DRR006523	Root Summer glycyrrhizin low producing strain	48.314
DRR006524	Root Summer glycyrrhizin low producing strain	48.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.923

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.588
SRR2868004	Drought Stress (root)	32.607
SRR2967015	Control (root)	34.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.776
SRR9715740	Leaf	17.612
SRR9715741	Leaf	14.867
SRR9715739	Root	9.179
SRR9715742	Root	17.363
SRR9715743	Root	14.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.802
SRR8749028	MeJA induced 9h	41.680
SRR8749029	MeJA induced 9h	39.077
SRR8749030	Uninduced	17.149
SRR8749031	Uninduced	7.224
SRR8749032	Uninduced	11.003

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.260
SRR8400027	Control - Root	35.340