Gene detail

Gene detail information of Glyur000934s00021599

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04460.1	1.00E-80	peroxin-12
NR	XP_004497381.1	3.19E-148	PREDICTED: peroxisome biogenesis protein 12-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9M841\|PEX12_ARATH	2.00E-117	Peroxisome biogenesis protein 12
trEMBL	tr\|V7BQA9\|V7BQA9_PHAVU	8.00E-144	Uncharacterized protein {ECO:0000313\|EMBL:ESW19203.1}

Sequence

Transcript Sequence

>Glyur000934s00021599.1
GGCGGTGTTGGGTGTGGAGGCTTCAATCGACTCGACGATGTTGTTTCAGGTGGGTGGGCAAGGGAGCCGTCCGACGTTCTTTTTTTTGGCGGCGGCGGAACAGCTTCCCCGCAGTCTCCGCGCTTTTTTTTCTTACTCAATCGGCGTGTTGGCATTGCGAAGACCCTTTTTTTTTAGATTGTTAGACTACGAAGACGAATCTTTCGCCTTATTTTTTTTCGTCCTCGAATCCCACAGCTTACGCACCACAGATGCTTCTTTTTCTGAATCTCTTTTTTTTTTCCGAAGAAGACCCGCCAATATCAGAGTCGATAACGTTTTTTTTACTGGTTCACAGTTACAGAAGCGCCAAAAATTGCATTCTATCTACAACAAGGAAAGGGTTTTTTTTATTCAGGCGAGTCTATGGGGAGATGAAAACGAAGGATTTTTTTTTGTTGATGATGATGGTGGAGGAGGAGGAGGTTTCGATTTTTTTTCTCTAGTGTCCACGGCAACCTTGGATGCCCGTGCCTCCGTTACAGCACGCATCACGAAGAGACTCAGGAAAATTGTCGGGTTTTTTTTCCCGTGGTTACATGCTGGTACTGAGGGCTTGCAATTCACTTACCAGATGTTTTTTTTGTTGGATGCTACTGGATACTACACATTAGCACTGCAGGCACTTGGGATTCATGTGTGCCGAGCTACCGGCCAAGAGCTGATGGATACCTCTTCTAGAATTTCAAAGATTTTTTTTCGGGAACGTGAGAGACTTCGTGGCCCTCAATGGTTGGAGCATTGCTCAGCTGTTCATACACTGTACTTTTTTTTTTACAAACCGATGATGGAATGGTGGTATTTTTTTTCTGAGGAGAGAATGTCAGCTCCAACTGTATATCCTCTTTTTTTTCCCCCTCCCCCACCAAAGGTAGCTTTTTTTTGGACACCGCTTCCATCAGACAGAACAAGTTGCCCCCTGTGCTTGCAGAAGCGCGTAAATCCATCTGTGATTACAGTTTCGTTTTTTTTCTTCTGCTATGCTTGTGTATTTAAACACCCTGACTTTGTTGTTGAGAGGAATGTTAGTGGCGAGGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00934	90982	95039	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006625 protein targeting to peroxisome

cellular_component
GO:0005779 integral component of peroxisomal membrane

molecular_function

GO:0008022 protein C-terminus binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000934s00021599.1	PF04757.9	Pex2_Pex12	21	268	4.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.996
SRR1783600	control	2.788
SRR1783602	moderate drought stress	3.315
SRR1811619	moderate drought stress	3.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.893
DRR006520	Root Summer glycyrrhizin high producing strain	1.064
DRR006521	Root Winter glycyrrhizin high producing strain	1.033
DRR006522	Root Winter glycyrrhizin high producing strain	1.378
DRR006523	Root Summer glycyrrhizin low producing strain	1.022
DRR006524	Root Summer glycyrrhizin low producing strain	1.565
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.270
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.508

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.530
SRR2868004	Drought Stress (root)	0.732
SRR2967015	Control (root)	0.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.877
SRR9715740	Leaf	1.287
SRR9715741	Leaf	1.463
SRR9715739	Root	0.622
SRR9715742	Root	0.704
SRR9715743	Root	0.979

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.546
SRR8749028	MeJA induced 9h	0.585
SRR8749029	MeJA induced 9h	0.387
SRR8749030	Uninduced	0.116
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.315
SRR8400027	Control - Root	1.551