Gene detail

Gene detail information of Glyur000934s00021596.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G29560.1	7.00E-87	caleosin-related family protein
NR	XP_004494730.1	3.09E-127	PREDICTED: peroxygenase 2-like isoform X1 [Cicer arietinum]
COG	YP_008154989.1	5.00E-26	hypothetical protein SCE1572_43185 [Sorangium cellulosum So0157-2]
Swissprot	tr\|O81270\|PXG1_ARATH	2.00E-93	Peroxygenase 1
trEMBL	tr\|A0A072U607\|A0A072U607_MEDTR	1.00E-125	Caleosin CLO1-1 {ECO:0000313\|EMBL:KEH24578.1}

Sequence

Transcript Sequence

>Glyur000934s00021596.1
AACCAAGCGAGTCACTTGGAATCTGTTACAATCACCCTGCCGTTGCCGTTTTTTCTCCTCTTCTCAAGCATTTCCCTATTATTGAGCATCTTCTCCAAATCTCACAATCAATCAATGCCACAAAAAGTACTAAAAGGCAAGAACCACTTCATCATCCAATTTCGCTAAAACAGAGACAGAGATAGTGATGGCAACAGTAGTGGAAGCATCCAGCGAAGCCANGGCAACGGTGGCCGAGAAGGCTCCAGTAACTGCTCACAGGAAGGTCCCCCAGGACTTGGAAACCAAGCTCCCCAAACCCTATATGCCTCGNGCCTTGACTGCACCTGATACAGAGAACGTGAATGGCACGCGGGGCCACAAGCATAATGACATGTCCGTGCTTCAGCAACATGCAGCCTTCTTCGACCTTGACAATGACGGTATCATCTACCCATGGGAGACATACAGAGGNACTACTTTCACTCCATTTTGTCTCCGCGCAATCGGTTTCAACGTGATTTCTTCCTTCCTGGTTATGATTATTGCTCATGCAGCTCTCAGTTATTCTACTCTTCCTACATGGCTGCCTTCACCTTTGTTCCCAATTCACATACGAAATATACACAGGGCAAAGCATGGAGGTGATTCAGGGAGCTATGACACAGAGGGAAGGTTCATCCCAGCAAATTTCGAAATGATGTTCAGCAAGTATGCACGTGAAGTGCCTGATAAATTGGCTGCCAGCAAATTTGAGTGGGGAGTGTTGTATATCCTAGCAAAGGACGATCAGGGTTATCTGTCAAAAGAAGCTGTGAGGCGTTGTTTTGATGGGAGCCTATTTGAGTATTGTGCTAAAGCGCGCAAGGGTACCGCTGGAAAGATGGCTTGACAACTTCTCTACCAAACCTTCATATTAGCAGTATTAAATTAAATGCTAGGATAAGAGTGTTTGCANGATCAAATAAAATTAGCAAAATGCTTTTCTTAATTTCAATTGACTTCTTATTATTTGTTACCTTTACAGAGTTTAATTAAGCATCGTTTACTCAACCTATCGCAAACTAATTTGGAGTACCGGTACATGATTATTCTTCAATGGATGCAACCGCATATATAAAGGATAGGACAATGATACACATGCACTTCATCACCCATTCCACACCTCATTCAAATGAAGTGATAGGCGTGGGAGGGGAGTCCATCCTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00934	79095	81563	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17991	PXG	EC:1.11.2.3	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000934s00021596.1	PF05042.8	Caleosin	58	180	5.00E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.340
SRR1783600	control	14.614
SRR1783602	moderate drought stress	36.156
SRR1811619	moderate drought stress	36.415

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.539
DRR006520	Root Summer glycyrrhizin high producing strain	9.245
DRR006521	Root Winter glycyrrhizin high producing strain	2.487
DRR006522	Root Winter glycyrrhizin high producing strain	2.364
DRR006523	Root Summer glycyrrhizin low producing strain	9.266
DRR006524	Root Summer glycyrrhizin low producing strain	8.879
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.070
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.042

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.108
SRR2868004	Drought Stress (root)	4.689
SRR2967015	Control (root)	3.998

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.661
SRR9715740	Leaf	0.439
SRR9715741	Leaf	0.874
SRR9715739	Root	0.610
SRR9715742	Root	1.430
SRR9715743	Root	0.860

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.407
SRR8749028	MeJA induced 9h	2.293
SRR8749029	MeJA induced 9h	1.058
SRR8749030	Uninduced	0.821
SRR8749031	Uninduced	0.032
SRR8749032	Uninduced	0.303

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.736
SRR8400027	Control - Root	2.654