Gene detail information of Glyur000934s00021587 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28640.1 | 9.00E-27 | SSXT family protein |
| NR | XP_007147196.1 | 7.43E-77 | hypothetical protein PHAVU_006G103700g [Phaseolus vulgaris] |
| Swissprot | tr|Q8L8A5|GIF1_ARATH | 3.00E-54 | GRF1-interacting factor 1 |
| trEMBL | tr|V7BQ71|V7BQ71_PHAVU | 3.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:ESW19190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00934 | 33542 | 37767 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000934s00021587.1 | PF05030.7 | SSXT | 19 | 74 | 3.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.082 |
| SRR1783600 | control | 0.113 |
| SRR1783602 | moderate drought stress | 0.611 |
| SRR1811619 | moderate drought stress | 0.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.755 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.672 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.162 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.465 |
| SRR2868004 | Drought Stress (root) | 1.727 |
| SRR2967015 | Control (root) | 1.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.591 |
| SRR9715740 | Leaf | 2.396 |
| SRR9715741 | Leaf | 2.010 |
| SRR9715739 | Root | 1.309 |
| SRR9715742 | Root | 0.623 |
| SRR9715743 | Root | 0.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.865 |
| SRR8749028 | MeJA induced 9h | 3.489 |
| SRR8749029 | MeJA induced 9h | 5.851 |
| SRR8749030 | Uninduced | 3.881 |
| SRR8749031 | Uninduced | 1.804 |
| SRR8749032 | Uninduced | 1.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.253 |
| SRR8400027 | Control - Root | 1.342 |