Gene detail information of Glyur000934s00021585 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08800.2 | 1.00E-56 | Protein of unknown function, DUF593 |
| NR | KEH24568.1 | 0 | zein-binding protein [Medicago truncatula] |
| trEMBL | tr|A0A072U5Z8|A0A072U5Z8_MEDTR | 0 | Zein-binding protein {ECO:0000313|EMBL:KEH24568.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00934 | 15794 | 20567 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000934s00021585.1 | PF04576.10 | Zein-binding | 615 | 708 | 7.50E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.984 |
| SRR1783600 | control | 8.063 |
| SRR1783602 | moderate drought stress | 7.380 |
| SRR1811619 | moderate drought stress | 7.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.948 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.059 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.983 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.847 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.255 |
| SRR2868004 | Drought Stress (root) | 21.121 |
| SRR2967015 | Control (root) | 20.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.592 |
| SRR9715740 | Leaf | 3.459 |
| SRR9715741 | Leaf | 4.904 |
| SRR9715739 | Root | 2.400 |
| SRR9715742 | Root | 8.506 |
| SRR9715743 | Root | 7.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.119 |
| SRR8749028 | MeJA induced 9h | 5.345 |
| SRR8749029 | MeJA induced 9h | 3.579 |
| SRR8749030 | Uninduced | 7.030 |
| SRR8749031 | Uninduced | 7.925 |
| SRR8749032 | Uninduced | 5.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.585 |
| SRR8400027 | Control - Root | 13.267 |