Gene detail information of Glyur000932s00035816 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42610.2 | 7.00E-60 | Protein of unknown function (DUF640) |
| NR | AFK47598.1 | 1.28E-91 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9S7R3|LSH10_ARATH | 7.00E-77 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 |
| trEMBL | tr|I3T506|I3T506_LOTJA | 5.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:AFK47598.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00932 | 7884 | 8423 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000932s00035816.1 | PF04852.7 | DUF640 | 16 | 144 | 7.30E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.279 |
| SRR1783600 | control | 6.627 |
| SRR1783602 | moderate drought stress | 15.106 |
| SRR1811619 | moderate drought stress | 15.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 112.520 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.254 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.311 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.648 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.300 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.532 |
| SRR2868004 | Drought Stress (root) | 6.244 |
| SRR2967015 | Control (root) | 6.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.489 |
| SRR9715740 | Leaf | 0.852 |
| SRR9715741 | Leaf | 0.240 |
| SRR9715739 | Root | 19.240 |
| SRR9715742 | Root | 15.482 |
| SRR9715743 | Root | 19.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.982 |
| SRR8400027 | Control - Root | 23.844 |