Gene detail

Gene detail information of Glyur000931s00028720.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	3.00E-158	Leucine-rich repeat receptor-like protein kinase family protein
NR	KHN40541.1	0	Putative LRR receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	2.00E-66	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|G7KU89\|G7KU89_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES80539.1}

Sequence

Transcript Sequence

>Glyur000931s00028720.1
GCTTGTGTCCCCAATCACGCCGAGCCTCCCATCATCACCATACAATATATATACATCCACTTGAAAGAATCTCCATCTGCATCCTTAGATTGTATTCTTGATCCAAAAATCCTGTTATACGTGAACCATGGTACCCATGTTTGAAAGCGTAAAATTCATCAAGAGTCTAGCATGTTGGAGGATTCTCTTCATATTCCTTTGGATCCTTCTGCCACCCTCTTTGCCTCAAGTTGCTGGTTTTTCCAAAACCGCTTCTTTGAGTTTGACCCATGCTGCCACAATTACTAATGTTCATGATCAAGCTGCAGTTGTAGACAAGGAAGCAAATGCTCTGTTGAGGTGGAAACACAGCCTTGACAATCACAGCCAAGCCCGCTTGTCAACTTGGACTGGTGCTAGTCCATGCAAATGGCAAGGAATTCAGTGTGACAAATCCAAGTCCGTCTCACGCATAAATCTTGCAAGTTATGGACTACAAGGTACACTCCACACACTCAGCTTCTCCTCATTCCCCAACCTCTTCAGCATAGATATCTACAAAAACCACTTTTATGGGACCATTCCCCCACAAATTGGCAACCTGTCCAAAGTAAATGTTTTGAACTTCTCTTTAAATTCTTTTGATGGTTCCATCCCAAAAGAGATGTGGACATTAAGGACATTACAGAAACTTGATCTCTCCTTGTGTAAACTAAGTGGAGAGATTCCTAGCTCCATAGGAAACTTGTCCAACCTATCATTTCTGGATTTAGGTGACAACAAAATTTCTGGCCACATTCCTCCAGAGATTGGGGAATTGAGCAACTTGGGGTATCTACGCATTGCTGATAACAAACTTTTGGGTTCCATTCCTCCAGAAATAGGAATGTTGACAAACCTTCGTTATCTTGATTTGTCACTGAACTCTCTATCCGGTGTTATTCCTAATACAATAGGTAACATGAGCAACTTAAATAAACTTTACCTTTCTAATAACACCATGTTGTCTGGACCAATCCCTCCCTCCTTGTGGAACATGTCTAACTTGACCTTGTTCTACCTTGATAACAATAATTTTTCTGGATCAATCCCTGCTTCAATAGAAAACTTGGCCAATTTGAATGAACTTGCACTCGATAACAACCACCTTTCTGGACTTATTCCATCCACCATTGGGAACTTGACAAAGCTCGGGTCGTTGTTCTTGAGCTTCAATTGTTTTTCTGGATCAATTCCTCCCTCCATAGGAAATCTAATCAATTTGGAGATCCTCAGTCTCCAAAGAAACAATCTCTCTGGATCTATTCCTGTCACAATTGGAAATTTGACAAGGCTCACTGTTTTGGAATTATCCACTAACAAACTTAATGGTAGCATTCCGCAGGTTCTGAATAATATGACAACCTGGGTTTCCTTGTCATTAGCCAGTAATGATTTCATCGGCTATATACCTCCTCAAATATGCTCCGGCGGGTCACTATTATACTTAAATGCTGAGCACAACCATTTCACTGGCCCAGTACCACCAAGCCTGAAAAACTGCTCTAGTATTATAAGACTCACGCTTCAGAATCTTGAAGAGCTGGATCTCGGAGGAAACATGTTGAGTGGCACAATACCAAAACAAGTTGTGATGTTACCCAAGTTACGGAACTTGAATTTGAGCAAAAACAAATTCGAGGGAAGCATTCCCTCGGAGTTTGGCCAATCACAACCTCTTGATTCTCTTGACCTTAGCTCGAATTTGTTGAGTGGAACAATACCAACAACGCTTGGAGACTTGAAGCAATTGGAATCGCTGAATCTGTCATGCAATAATCTCTCAGGCACAATACCATCCAGTTTTGGTGACGGCAATGACATGACAAGCTTGACTTTTGTCAACATATCATACAACCAGCTAGAAGGGAGGCTTCCAAATAATAAAGCCTTTCTTAACGCTTCAATTGAATCTAACAAAGGTTTGTGTGGTAATCACACTGGCTTAGTGCTTTGCCCAACCAACCAAGGTCAGAAGAGCCACAAGGTCATCCTACTAGTATTGTTTGTCATCTTAGGTGCTCTACTACTAGTTTTTTGTGGGGTGGGAGTTTCAATGTATATTCTTTGCCGGAGAGCAAGAAAGAAAGAAGTTGAGGATAAAGATTCTAAAGAAGGACAATCAGAAGAAGTCTTTTCCATATGGAGTCACGATGGAAAAATGGTGTTTGAAAATATCATTGAAGCTACCAATAATTTTGANGACAAATATCTCATTGGAGTGGGAGGGCAAGGGTCTGTTTACAGGGCCAAGTTAGCTTCAGGTCTGGTTGTTGCAGTGAAGAAACTTCATTTGGGAACAGATGGAGACAGGCCCAATTTCAAAGCTTTTGAAAATGAAATTCAAGCTTTGACAGAAATCAAGCATCGTAACATTATAAAGCTCTATGGATTTTGCTCACACTCACGATTCTTATTTTTGGTTTACAAGTTCTTGGAAGGGGGTAATTTGGCTCAAATGCTAAACAATGACACAACAGCAATTGAGTTTGATTGGGAAAGGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTATATGCATCACGACTGCTTACCTCCAATAGTTCATCGTGACATATCCAGCAAGAATGTTCTTTTGGATTTAGAATATGAAGCTCATCTTTCTGATTTTGGAACAGCCAAGTTTCTGAAGCCTGATTCACACACTTTGACAGCATTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACCATGCAAGTGAACGAGAAATGTGATGTTTTCAGCTTTGGAGAGAGGGAGTTAGATATGACAGACATGCCTGTCTATAAATTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00931	93039	97679	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000931s00028720.1	PF08263.7	LRRNT_2	63	101	4.30E-07
Glyur000931s00028720.1	PF12799.2	LRR_4	178	214	1.00E-06
Glyur000931s00028720.1	PF13855.1	LRR_8	225	283	2.00E-07
Glyur000931s00028720.1	PF00560.28	LRR_1	299	321	0.86
Glyur000931s00028720.1	PF00560.28	LRR_1	371	393	0.16
Glyur000931s00028720.1	PF00560.28	LRR_1	475	492	0.27
Glyur000931s00028720.1	PF00560.28	LRR_1	499	519	0.3
Glyur000931s00028720.1	PF13855.1	LRR_8	524	585	2.10E-08
Glyur000931s00028720.1	PF00069.20	Pkinase	702	887	4.50E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.064
SRR1783600	control	8.381
SRR1783602	moderate drought stress	9.297
SRR1811619	moderate drought stress	9.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.019
DRR006520	Root Summer glycyrrhizin high producing strain	9.033
DRR006521	Root Winter glycyrrhizin high producing strain	0.157
DRR006522	Root Winter glycyrrhizin high producing strain	0.192
DRR006523	Root Summer glycyrrhizin low producing strain	1.139
DRR006524	Root Summer glycyrrhizin low producing strain	1.208
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.423

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.288
SRR2868004	Drought Stress (root)	12.025
SRR2967015	Control (root)	12.252

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.747
SRR9715740	Leaf	1.704
SRR9715741	Leaf	2.835
SRR9715739	Root	1.088
SRR9715742	Root	11.687
SRR9715743	Root	10.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.003
SRR8749030	Uninduced	0.001
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.664
SRR8400027	Control - Root	14.477