Gene detail

Gene detail information of Glyur000931s00028712

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02130.1	2.00E-98	RAS 5
NR	XP_003624319.1	1.99E-129	Ras-like protein [Medicago truncatula]
COG	YP_008431664.1	2.00E-21	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|P28188\|RAD2A_ARATH	1.00E-123	Ras-related protein RABD2a
trEMBL	tr\|G7KU87\|G7KU87_MEDTR	7.00E-130	RAB GTPase-like protein B1C {ECO:0000313\|EMBL:AES80537.1}

Sequence

Transcript Sequence

>Glyur000931s00028712.1
ATGTTAAATTCTTCTCGGTCAATTTTTAATTGGATTGGATCTACCATACAATCATCATCACCATTACAAATACGTCACCAAGCAAAGCAAACCAGCGAAGCTAACGAACTGCGATTCCTTCTGATCTTCCGAGTTGAAGCACTGCCACCGGACCAATCTCCGGCGAACCCCTCCGGCGATAACTCACCGATCTCCGGCGAATTAACGGTCCCCTTTTGCTTTATCAGAAATGAATCCCGAGTACTCCTTCTTATTGGGGACTCTGGTGTTGGCAAATCATGCCTTCTTCTGAGATTTGCTGATGATTCCTACATTGACAGCTACATAAGTACCATTGGAGTTGATTTTGTAAGTACAACATCGCAAAGTTTTATCTTGGAACTGATTAAAGCAATTTCTAAACTCATTTTGTGTTACTTTAAAATACGTACNGTTGAGCAAGATGGGAAGACCATTAAACTCCAGATCTGGGATACAGCTGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTACCGTGGGGCACATGGAATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAACAATGTGAAGCAATGGCTCAGTGAAATCGACCGCTATGCCAGTGATAATGTGAACAAGCTCTTGGTTGGCAACAAGTGTGATCTGGCAGCAAATAGAGCTGTGTCATATGATACAGCTAAAGCATTTGCAGATGAAATAGGCATACCTTTTATGGAAACAAGTGCAAAAGATTCTACAAATGTTGAGCAGGCATTTATGGCAATGGCTGCTTCTATCAAGAATAGAATGGCAAGCCAACCGGTAAACAATGCAAGGCCTCCAACAGTGCAGATCAGGGGACAGCCAGTTGGGCAGAAAAGTGGGTGCTGCTCTTCCTAACCACAACCAAGTTCTTCACATCCACAAAGTTATTGCTTGTAAGATTTTNTTTTTTTTTNCTAAATAGCGGACCATTGTCAGAATTTGTCTTGTGGTTTGGAACTGACCTAGACGATCCCATTCTTTGAATACACTTAATGATATGGTTTGTGCAAAGTATAATACTCATTAATTAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00931	61259	65860	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000931s00028712.1	PF00071.17	Ras	82	265	5.70E-60
Glyur000931s00028712.2	PF00071.17	Ras	82	241	3.40E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.722
SRR1783600	control	53.984
SRR1783602	moderate drought stress	37.051
SRR1811619	moderate drought stress	37.671

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	82.372
DRR006520	Root Summer glycyrrhizin high producing strain	80.337
DRR006521	Root Winter glycyrrhizin high producing strain	95.918
DRR006522	Root Winter glycyrrhizin high producing strain	93.425
DRR006523	Root Summer glycyrrhizin low producing strain	95.808
DRR006524	Root Summer glycyrrhizin low producing strain	95.114
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.154
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.130

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	159.671
SRR2868004	Drought Stress (root)	147.890
SRR2967015	Control (root)	134.801

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	119.694
SRR9715740	Leaf	99.583
SRR9715741	Leaf	131.135
SRR9715739	Root	31.991
SRR9715742	Root	43.749
SRR9715743	Root	41.982

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	188.165
SRR8749028	MeJA induced 9h	125.345
SRR8749029	MeJA induced 9h	228.279
SRR8749030	Uninduced	195.258
SRR8749031	Uninduced	283.743
SRR8749032	Uninduced	302.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	107.414
SRR8400027	Control - Root	113.741