Gene detail

Gene detail information of Glyur000930s00030234

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G13540.1	ARM repeat superfamily protein
NR	AES80701.2	nuclear cap-binding protein [Medicago truncatula]
Swissprot	tr\|Q9SIU2\|NCBP1_ARATH	Nuclear cap-binding protein subunit 1
trEMBL	tr\|G7KX77\|G7KX77_MEDTR	Nuclear cap-binding protein {ECO:0000313\|EMBL:AES80701.2}

Sequence

Transcript Sequence

>Glyur000930s00030234.1
TTCAGACCTAAAACCCTGCAAGTGCAAACAAACCCCTGTTACAATTGTTCCTTCATTCTCGTTCCTTGTTTTCCTTCTCACTCTGTAGGACACGATGAGCAGTTGGAGAAGCCTTCTTCTACGAATCGGTGACAAGAGTCCCGAATATGGACCCTCCTCCGACTTCAAAGACCACATTGAAACCTGTTTTGGTGCCCTTCGTCGTGAGCTTGATCACTCCAACACTGAGGAGATTTTGGAGTTTCTTCTCGCATGTGGTGAGCAATTGCCTCACAAGATTCCTTTATATGGAACCCTGATTGGCTTGATTAACTTGGAAAATGAGGACTTTGTGAAAAGACTAGTGGAGAAAACTCAAACTAAATTTCAGGAACCTGTTCGAACACAGTGGACCAGCGACAAGGAGGGATACCATTCATCGGAGGGAGCCCTAAGTAAACTTGGTCTTCAAGATGCCTTAGATTCTGGAAACTGCAACGGCATTCGTATTCTAATGCGGCTTATGACTGTTATGCATGAGATGTGCAGTAAGGTTCTTCATCCAAGCTCTGTGGTGGATGTCTTTGAAACATTTTTATCATCGGCTGCCACAACAGTCGATGAGGAAAAAGGGAATCCCTTATGGCAGCCATGTGCTGACTTTTACATTACTTGCATTTTATCATGCCTCCCATGGGGCGGGGCTGAACTTGTTGAGCAAGTTCCTGAAGATATTGAGAGAGTAATGGTCGGTGCAGAAGCTTACTTGAGCATCAGAAAGCATACCTCCGACACTGGTTTATCCTTTTTTGAGAATGACGATGAAACCGAGAGAGGTCTCAACAAGGATTTTTTGGAAGACTTATGGGATAGAATACAAGTTTTATCAAGCAATGGATGGAAAGTTGAAAGTGTTCCAAGACCTCATCTTTCATTTGAAGCTCAGCTGGTTGCTGGGAAGTCGCATGAATTTGGGCCAATAAACTGCCCCAGCTTGCCAAACCCACCTCCAGTCCCTGCTAGCATGCATTTTGGGAAACAGAAGCATGAGGCAGAATTAAAATATCCTCAAAGAATACGACGGCTAAATATTTTTCCTTCCAGTAAAATTGAGGATCTACAGCCTATAGATCGATTTGTTATGGAAGAGTATCTCCTAGATGTGCTTCTGTACTTCAATGGCTGTCGAAAGGAATGTGCTTCTTTCATGGTTGGCCTGCCAGTTGCCTTCAGATATGAGTACCTCATGGCTGAGACAATATTCTCTCAGCTGTTGATGCTTCCACAACCGCCTTTCAAACCAATGTATTACACTCTGGTTATTATTGACCTTTGTAAGGCTCTTCCTGGAGCTTTTCCTGCAATTGTAGCTGGAGCAGTTCGTGCTCTCTTTGAGAGGATTGCTGATTTGGATATGGAGTGTCGAACACGTCTAATCCTTTGGTTCTCACACCATTTGTCAAACTTTCAGTTCATATGGCCATGGGAAGAGTGGGCTTATGTCTTAGATCTCCCAAGGTGGGCTCCTCAACGTGTCTTCGTTCAGGAGGTTTTGGAGAGGGAAGTCCGCTTGTCATACTGGGACAAAGTCAAACAGAGCATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGACCAAACTTCAGTTTTGGTGCAGAAGATGGTAAAGAAAACAATGGGCATGTGCTGTCTGGAGAGCTCAACGACATGGTTAAAGGGAAGGTTCCTGTNCGTGAAATAATTGCATGGATTGATGAAAGTGTGTTTCCAAATAATAGTCTAGAAATTACACTCAGAGTGATNGTACAAACTCTTCTCAATATTGGGGCCAAGAGTTTCACTCATTTGATAACAGTATTAGAGAGATATGGGCAAGTCATTGCAAAAATATGTCCTGACCAGGATAAGCAAGTTATGCTGATAGCTGAAGTCAGTTCTTTCTGGAAGAGTAACACTCAAATGACAGCAATAGCTATTGACAGAATGATGGGTTATCGACTTGTATCGAATCTGGCTATTGTGAGATGGGTCTTCTCAGAAGAAAATATTGAGCAATTTCATACATCGGATCGTCCATGGGAGATTCTTAGAAATGCAGTAAGCAAGACATACAATCGTAATTCTGATCTTAGGAAAGAGATATTGTCTCTTAAAAGGAATATTTCATCAGCTGAAGAAGCTGCGAAGGAGGTAAAAGCAGAGTTAGATGCTGCAGAGTCAAAACTCACATTAGTGGATGGTGAACCAGTTCTTGGTGAAAATCCTGTTAGGTTGAATAGATTGAAATCACGTGCTGAAAAAGCAAAAGAGGAGGTGGTGTCTCTTCAAGAATCTTTAGAAGCTAAGGAAGCTCTTCTTGCCCGAGCAGCTGATGAAAATGAGGCATTGTTTCTCTCATTGTACAAAAGCTTCTCAAATGTATTAACNGAGCGCCTTCCCAAGGGATCTGGAGCTACAACACTGCGTGAATTGAAGTCTGCACAAGTTGATGAGATGGCAGTTGACCCTGAAGAACCATCAACAATGGAATTAGACAATGAGAATCAGAGACCTCAAAACAGTCAGTCAAATGGTGGGAAGAAAAGTGGTGCTTCTTATAATGTAGGTGAAAAGGAGCAGTGGTGTATCACTACATTGGGCTATGTGAAAGCCTTTTCTAGGCAGTACGCTGCTGAGATNTGGCCCCATATTGAAAAGTTGGATGCAGAGGTATTGACAGAAGATGCANCTCCTCTTTTTCGGTCAGCTGTTTATTCTGGTCTTCGAAGACCAGTTAATGAGGCATGATCAATTTGTTATTTATATTCTGATCTTTTTTTAGATTAATCTACTACATCCATTCTTTAGTCTGATGGCTATGCACTCCCTTAGTTGATGGGGAAAGAAGAAAGCTGTATGCTATTGTAATGTAAATGACAAGGTGTGTATTAGAAGAATCTCCGCAGATTAGATTCTGATGGGACTTGTATACTTCCATTGTATATTGTTGATTTCGANCATAGCTCTACTAATTGGACCTAAATGCAATGGTTGAAGTTTGCATCACCTGTGGTGCATACTGGCATGTGCGAAAAATTTAAGCCTTTCATGTTTTGGTAGATGCATTGTGATTATCGTTTAACTCGATTGCCCGTTTATATGGGTTTTAAGTTGTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00930	41081	62365	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0016070 RNA metabolic process

GO:0045292 mRNA cis splicing, via spliceosome

GO:0051028 mRNA transport

cellular_component
GO:0005846 nuclear cap binding complex

molecular_function

GO:0000339 RNA cap binding

GO:0003723 RNA binding

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000930s00030234.1	PF02854.14	MIF4G	21	222	8.20E-20
Glyur000930s00030234.1	PF09088.6	MIF4G_like	373	496	4.30E-41
Glyur000930s00030234.1	PF09090.6	MIF4G_like_2	522	793	2.40E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.052
SRR1783600	control	12.910
SRR1783602	moderate drought stress	11.438
SRR1811619	moderate drought stress	11.302

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.659
DRR006520	Root Summer glycyrrhizin high producing strain	11.596
DRR006521	Root Winter glycyrrhizin high producing strain	10.294
DRR006522	Root Winter glycyrrhizin high producing strain	10.054
DRR006523	Root Summer glycyrrhizin low producing strain	13.053
DRR006524	Root Summer glycyrrhizin low producing strain	13.029
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.429
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.418

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.769
SRR2868004	Drought Stress (root)	19.077
SRR2967015	Control (root)	19.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.684
SRR9715740	Leaf	13.804
SRR9715741	Leaf	13.820
SRR9715739	Root	3.479
SRR9715742	Root	14.140
SRR9715743	Root	13.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.374
SRR8749028	MeJA induced 9h	30.013
SRR8749029	MeJA induced 9h	31.816
SRR8749030	Uninduced	7.897
SRR8749031	Uninduced	5.728
SRR8749032	Uninduced	8.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.411
SRR8400027	Control - Root	23.270