Gene detail information of Glyur000929s00034888 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56370.1 | 6.00E-24 | Leucine-rich repeat protein kinase family protein |
| NR | KHN02657.1 | 5.41E-177 | LRR receptor-like serine/threonine-protein kinase GSO1 [Glycine soja] |
| COG | YP_004775215.1 | 3.00E-25 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9SHI2|Y1723_ARATH | 8.00E-32 | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (Precursor) |
| trEMBL | tr|A0A072UA88|A0A072UA88_MEDTR | 2.00E-171 | Receptor-like protein {ECO:0000313|EMBL:KEH25998.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00929 | 56373 | 62171 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000929s00034888.1 | PF08263.7 | LRRNT_2 | 22 | 58 | 1.20E-12 |
| Glyur000929s00034888.1 | PF00560.28 | LRR_1 | 82 | 105 | 0.12 |
| Glyur000929s00034888.1 | PF00560.28 | LRR_1 | 263 | 282 | 0.52 |
| Glyur000929s00034888.1 | PF00560.28 | LRR_1 | 317 | 335 | 0.04 |
| Glyur000929s00034888.1 | PF00560.28 | LRR_1 | 380 | 397 | 0.094 |
| Glyur000929s00034888.1 | PF00560.28 | LRR_1 | 408 | 426 | 0.75 |
| Glyur000929s00034888.1 | PF13855.1 | LRR_8 | 455 | 514 | 4.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.047 |
| SRR1783600 | control | 0.060 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.040 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.103 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.861 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.182 |
| SRR2868004 | Drought Stress (root) | 0.389 |
| SRR2967015 | Control (root) | 0.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.525 |
| SRR9715740 | Leaf | 0.409 |
| SRR9715741 | Leaf | 0.558 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.053 |
| SRR8749028 | MeJA induced 9h | 0.111 |
| SRR8749029 | MeJA induced 9h | 0.001 |
| SRR8749030 | Uninduced | 0.014 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.013 |
| SRR8400027 | Control - Root | 0.018 |