Gene detail

Gene detail information of Glyur000928s00033576

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07400.1	3.00E-05	forkhead-associated domain-containing protein / FHA domain-containing protein
NR	XP_007159933.1	1.34E-09	hypothetical protein PHAVU_002G279600g [Phaseolus vulgaris]
Swissprot	tr\|Q9SXD1\|PPR91_ARATH	6.00E-119	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial (Precursor)
trEMBL	tr\|V7CNZ8\|V7CNZ8_PHAVU	5.00E-10	Uncharacterized protein {ECO:0000313\|EMBL:ESW31927.1}

Sequence

Transcript Sequence

>Glyur000928s00033576.1
CAAAAATTTGAATGAACCCTAGCAATCATTAGCCAGAGCCAGCTCCAGCCTCCTGCTTCGCTCGCCGTTGCCGTATCTTCACCTCTTGCCGCGGTGACCCACCCTCGTGTCCAGCTAGCAAAAGGGACACAAGACAGGACTAAGGGAACTGCATTTGGTGAAGCACTGCCTAAGGAACTTGAAAGAGGCTACATATTCAATCACAGTCATTGCCACCACAAAATGCATCCAAATTTGATAGTATCGATGATGCTGTAGCTTTGTTTCATCACATGATCAATATGCATCCCCTACNGTCAGTCGTGGAATTCACCAGAATCTTAGGAACAATTGCAAAGATGAAAAACTATGCCACAACTATTTATCTTTATACCCAAATGGAATATAAGGGCATCATGCCATTTACAGTTACTTTAAACATCTTGATGAATTGTTACTGCCATATGGGTCAGATGGGTCTTGCTTTCTGTGTAATGGGTAAGATTCTTAAATTGGGTTATAAACCAAGTAAAGTGTCTCTGACTACACTAATGAAGGGGTTGTTTATTATTGGTAGGATGAAGGATGCATTACACATTCATGATAATGAGATAGTTGCTAAAGGGTTTCGCTTGGACGAAGTTATGTATGGAACTTTAATCAATGGGCTGTGTAGGAATGGTAAAACAAGAGTTGCCATTCAAATTCTTCAAGAAATGAAGGGACACCTGGTTAAGCCCAATCTTGTCATGTACAATATAGTCATTGATGGTTTATGCAAAGAGAGACTTATAAATGAAGCATGTGATTTGTATTGTGAAATGATTACTAGGGGAATTTCCCCTGACGTTGTTACTTATAGTTCATTAATATATGGTTTCTATCATGCGGGCCAATGGAAAGAAGTTAGATTATTGCTGGATGAGATGATTGCTGCTAAAGACATCAGCCCAGATGTTTGTACCTTTAACATAATAGTTAATGCATTATGCAAAAAAGGGATGCTCTTAAAAGCCGGTATTATTTGTGATGTGATGATTGAAAGAGGTGAGCAACCTAACGTTATTACTTACACTATTTTGATGAATGGATATTGTTTAAACAATAAAGTGGACGAGGCAAGAAAATTGTTTGATATGATGATTGAAGTGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCTTGATTGAAGGTTATTGCAAGATAAAAAGAGTAGATGAAGCTATGAACCTGCTTAATGATATGTTTCATAATAAATTAGTTCCAAACATTTTTACTTACAATTCTCTAGTTGATGGCTTGTGCAAATCTGAGAGAATCTCCTCTGCATGGGAGCTTGTTAATGAAATGCACCATTGTGGTCATCCACTCCCTGATGTAACCACTTACAACATCTTATTAGACTCTTTATGCAAGATGCACCATCTTGACAAGGCAATTGCATTATTTAATCACCTTATTTTTGAAAGAAGTTTTGCACCCAATGTTTGGAGTTACAACATCTTGATTAGTGGTTGTTGCGAGAATAAAAGAATAGATAAAGCCGTGATTCTTTATGAAGATATGGGTTTCAAGAATTTGGTTCCAAATATTTTAACCTACAATATATTGTTAAAGGCTTTATGCGACCAGGGGCAACTTGATAAGGCAATCACATTATTTAACCAAATTGTTGATCATGGTATTTCTCCTAATCTCTTGTACAAAAGTGGAATGCTTAAGACTGCACAGAAGATTCCCCAGCATCTGTTTCATTAGAGGTTGTCATCCAGATGTCCAGACATAATTTATAATCAGTGAGCTTTGTCAAGAATTATCACAATCAGGAAAGGTGTTGCTTTTATAAATGGTAGACAATGATAATGACTTCCCTAATGCCACATTTGTTGAGACAGTTACTAATCTCTTCTATAGAAAAAGGGAGAACGATGAGGCAGAGAAATTTTTTCCCGAGAAATGTTCACTAGACATGTGAAAAACAATAAGGCCTTTGGAGCAGGCATATACCCTGTATATAGTGATCAGGATAGGGAACTTGGTCATTGGAAATCTGAAATGGTGTCAATTGAAAAAGACTTCGTTGTTCCTATTCCAATACTAGTACATATAAAGTTCTTTCTTGTCAATGAATCCATGTTCTTTGATTTGGCAATGGACCTAGATACTCTCTTGATTAGACCGGACTACCGGAGCAGTTGTGGCATCTGTGGTTGGCTGAGCCATCTTTACGGTACCGTGGCAGACTCAAATGGTGCAATGCTGGATTCTTCACATATTCTGCATGTTTGTCCAAGACGCCTTTGCAGCTGCCTTAGGAGAAAACTGCAAGAAAGTACAACTGATACGAATATGTCAGGTATGTTGGACGTTCTGAATCAATATGGATGGCCTGAATCATTGGAGTCTGAAATTATATATGGTGCTTCTTCTATTGGTTCATCTGTCAATTCAAAATTTATTGCTGCATTTTTGCCGCTGCTGGGAAGAAATCATTGCAACATTTTCATTCATAAGAGTCTGATCATGAAGTAGTCTCTTCTGCAATATTCATGATTCGTTGAAATTGTGTTCATTAATTCAGTAAATGGATGATGCTTTGACGGTGGGGCTGCTGAAATGCTAGCAAAGAACTGACAAATCTTCTGTTCAGATTATTTTCACCACTACTGAAGGAGTAAAGAATTCTTATAATGGCATTTTACCTCCAAGACGTATTCTTTGCTTCTCAGAGGATCATTCAGAGAGAAGAGAGTCACACGCATAAAGATCTCGCTTAGGACCTAATTTCTGGGGCCCTATCTAGGATCTTCATGTCCATCTCTCTGAACATCTTGGGCAACTTAAGGGGTACTCAGCCAAGAAAACTGCAAGTTTCAGCGAATAATTTTGGCGATGAACATATACCTGGAAGGGGAGCTTCGGTAAGACGCATAAAGGATGCTTGCGCGGAAGGTTCATTGGTGGCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00928	72584	79392	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000928s00033576.3	PF13041.1	PPR_2	106	151	5.20E-10
Glyur000928s00033576.3	PF12854.2	PPR_1	171	204	1.90E-10
Glyur000928s00033576.3	PF13041.1	PPR_2	210	258	2.10E-18
Glyur000928s00033576.3	PF12854.2	PPR_1	277	302	9.80E-08
Glyur000928s00033576.3	PF13041.1	PPR_2	316	365	4.80E-18
Glyur000928s00033576.3	PF13041.1	PPR_2	386	435	1.70E-15
Glyur000928s00033576.3	PF13041.1	PPR_2	458	507	8.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.129
SRR1783600	control	4.920
SRR1783602	moderate drought stress	9.031
SRR1811619	moderate drought stress	9.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.002
DRR006520	Root Summer glycyrrhizin high producing strain	4.272
DRR006521	Root Winter glycyrrhizin high producing strain	5.006
DRR006522	Root Winter glycyrrhizin high producing strain	4.978
DRR006523	Root Summer glycyrrhizin low producing strain	4.875
DRR006524	Root Summer glycyrrhizin low producing strain	4.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.371
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.423
SRR2868004	Drought Stress (root)	11.462
SRR2967015	Control (root)	10.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.995
SRR9715740	Leaf	3.283
SRR9715741	Leaf	2.403
SRR9715739	Root	0.625
SRR9715742	Root	2.666
SRR9715743	Root	2.316

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.867
SRR8749028	MeJA induced 9h	4.361
SRR8749029	MeJA induced 9h	1.456
SRR8749030	Uninduced	1.809
SRR8749031	Uninduced	0.493
SRR8749032	Uninduced	0.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.511
SRR8400027	Control - Root	10.159