Gene detail information of Glyur000927s00024242 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60440.1 | 5.00E-44 | AGAMOUS-like 62 |
| NR | XP_004511261.1 | 2.65E-139 | PREDICTED: agamous-like MADS-box protein AGL61-like [Cicer arietinum] |
| Swissprot | tr|Q9FKK2|AGL62_ARATH | 2.00E-52 | Agamous-like MADS-box protein AGL62 |
| trEMBL | tr|G7J813|G7J813_MEDTR | 1.00E-125 | MADS-box transcription factor family protein {ECO:0000313|EMBL:AES71710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00927 | 21162 | 21824 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | M-type |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000927s00024242.1 | PF00319.13 | SRF-TF | 17 | 64 | 1.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.826 |
| SRR1783600 | control | 0.887 |
| SRR1783602 | moderate drought stress | 1.138 |
| SRR1811619 | moderate drought stress | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.167 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.167 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.956 |
| SRR2868004 | Drought Stress (root) | 9.177 |
| SRR2967015 | Control (root) | 5.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.500 |
| SRR9715740 | Leaf | 0.261 |
| SRR9715741 | Leaf | 0.197 |
| SRR9715739 | Root | 0.970 |
| SRR9715742 | Root | 2.152 |
| SRR9715743 | Root | 1.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.160 |
| SRR8749028 | MeJA induced 9h | 3.313 |
| SRR8749029 | MeJA induced 9h | 4.739 |
| SRR8749030 | Uninduced | 16.394 |
| SRR8749031 | Uninduced | 19.549 |
| SRR8749032 | Uninduced | 20.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.651 |
| SRR8400027 | Control - Root | 34.728 |