Gene detail

Gene detail information of Glyur000926s00019317.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72680.1	3.00E-151	cinnamyl-alcohol dehydrogenase
NR	XP_004485621.1	0	PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like isoform X1 [Cicer arietinum]
COG	NP_386798.1	3.00E-103	zinc-type alcohol dehydrogenase [Sinorhizobium meliloti 1021]
Swissprot	tr\|Q9CAI3\|CADH1_ARATH	0	Probable cinnamyl alcohol dehydrogenase 1
trEMBL	tr\|G7IS81\|G7IS81_MEDTR	0	Cinnamyl alcohol dehydrogenase-like protein {ECO:0000313\|EMBL:AES63541.1}

Sequence

Transcript Sequence

>Glyur000926s00019317.2
AGGAAAAAAGAAACAATGAGTTCTGAAGGTGTTGGTGAAGATTGCCTAGGATGGGCAGCAAGAGATGCATCTGGAANTCTATCACCTTACAAATTCAGTCGCAGGGCTCCTGGGAACAAAGATGTTTATGTTAAAATTACACACTGTGGTATGCTGATGTTGTTTGGACAAGGAATAAAGTTGGCGATTCAAAGTATCCTCTTACATGAGATTGCTGGGGTTGTGACAAAGGTTGGTTCCAATGTCCAACGTTTCAAGGTCGGAGATCATGTTGGNGTGGGGACTTACGTCAATTCGTGCAGGGATTGTGAGTATTGTAATGACAGACTAGAAGTTCATTGTGTCAAGGGATCTGTTTTCACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTCCATTGTAGTACATGAAAGGCAGGTTATAGCTCCAGTTCATATCATGTATGTATTGCTTTGTGCTGGAATCACTGTTTATTCTCCCATGATACGCCATAAGATGAATCAACCTGGTAAGTCTCTAGGAGTGATTGGCCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGGAAGGCATTTGGTTTGCATGTAACAGTTTTAAGCTCTAGCATATCCAAGAAAGAGGAGGCAATTAGCCTTCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAGATGATGGCAAGTATTACTGCGTTGGCTAAATCATTGGACTTTATAATTGACACGGNATCCGGTGATCACCCATTTGATCCTTATATGTCATTGTTGAAGACATCTGGTGTTCTAGTCTTAGTTGGGTTCCCAAGTGAAATCAAATTCAGCCCTGCAAGCCTTATTTTAGGAATGAGAACTGTTTCCGGAAGTGTTACTGGTGGTACAAAAGAAACACAGGAGATGATTGANTTCTGTGCTGCAAACGGGATTCACCCAGATATAGAAGTGATTCCAATCAAGTATGCGAATGAAGCTCTTGAGAGGGTCATAAATAAGGACGTGAAATATCGGTTCGAAAAAGAAATTATGAGTTCTGAAGGTGTTGGAGAAGATTGCCTAGGATGGGCAGCAAGAGATGCATCTGGTTCTCTCTCACCTTACANATTCAGTCGCAGGACTCTTGGGAACGAAGATGTTTATATTAGAATTACACACTGTGGCGTTTGTTATGCTGATGTTGCTTGGACAAGGAATAAACATGGTGATTCAAAGTATCCTGTTGTGCCTGGACATGAGATTGCTGGGGTTGTGACAAAGGTTGGTTCCAGTGTCCACCGCTTCAAGGTCGGTGACCATGTTGGAGTGGGGACTTACNTCAACTCGTGCAGGGATTGTGAGTATTGTAACGACAGACTAGAAATTCATTGTGTCAAGGGATCAGTTTACACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTCCATTGTGGTACATGAAAGGTATTGCTTCATGATACCTAAAAGCTATCCTTTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATCACTGTTTATTCTCCCATGATNCGCCATAAGATGAATCAACCTGGTAAGTCTCTAGGAGTGATTGGCCTTGGTNGCCTCGGTCATATGGCAGTGAAATTTGGGAAGGCATTTGGTTTGCATGTAACAGTTTTAAGCTCTAGCATATCCAAGAAAGAGGAGGCACTGAGCCAGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAGATGATGGCGTTGGCTAAATCGTTGGACTTTATAATTGACACGGCATCTGGTGATCACCCATTTGATCCTTATATGTCACTGTTGAAGACATCTGGTGTTCTAGTCTTAGTTGGGTTCCCAAGTGAAGTTAAATTCAGCCCTGCAAGCCTTATTTTAGGAATGAGAACTGTTTCCGGAAGTGTTACCGGTGGTACAAAAGAAATACAGGAGATGATTGACTTTTGTGCTGCAAATGGGATTCACCCAGATATTGAAGTGATTCCAATTGGGTATGCAAATGAAGCTCTTGAGAGGGTCATAAATAAGGACGTGAAATATCGGTTTGTAATAGATATTGAAAACTCCCTAAAGTAATACTGAAGAAATAGGAAGTTGCTTCTGAAGTGAGACTTGGAAGGACTTCACCTTTTCGACACATGCTGGAGTCAAATTGTGATGGTCAAATGTTCCATAATGATTGCAGATGTATAGGTGATTCAAATTTCAAATGCAATCCGAATAAAGTTCTTGAGAGGGTCATCAATAGAGACGTCAGATATCGGTTTATAGTAGACGTTGNGAACTCTATTAAATAATGTTAGAGAAATAAGAAGTTGCTTCCCATGTTAGAATTATGGTTCGATTTCACCTTGCTCAATACATATTTTGGAGCAAATAAATGAAATAATGGTGGGAAGTGTTTATATTGACTGCCCGTGTATCAGGTAACAGACTTTTTGGCTTCTAGGNTTTTGTTTCTCTTTTTAAGTACTCCCTTCGTCTCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00926	9554	17434	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00083	E1.1.1.195	EC:1.1.1.195	Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000926s00019317.2	PF08240.7	ADH_N	47	143	1.30E-15
Glyur000926s00019317.2	PF00107.21	ADH_zinc_N	182	308	2.00E-17
Glyur000926s00019317.2	PF08240.7	ADH_N	379	492	4.20E-24
Glyur000926s00019317.2	PF00107.21	ADH_zinc_N	537	658	2.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.369
SRR1783600	control	8.401
SRR1783602	moderate drought stress	18.212
SRR1811619	moderate drought stress	18.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.989
DRR006520	Root Summer glycyrrhizin high producing strain	32.722
DRR006521	Root Winter glycyrrhizin high producing strain	31.128
DRR006522	Root Winter glycyrrhizin high producing strain	30.159
DRR006523	Root Summer glycyrrhizin low producing strain	28.568
DRR006524	Root Summer glycyrrhizin low producing strain	28.356
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.218
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.745
SRR2868004	Drought Stress (root)	27.169
SRR2967015	Control (root)	27.106

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.059
SRR9715740	Leaf	22.916
SRR9715741	Leaf	19.816
SRR9715739	Root	10.848
SRR9715742	Root	22.416
SRR9715743	Root	18.354

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.674
SRR8749028	MeJA induced 9h	23.586
SRR8749029	MeJA induced 9h	15.610
SRR8749030	Uninduced	20.516
SRR8749031	Uninduced	14.552
SRR8749032	Uninduced	15.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.480
SRR8400027	Control - Root	16.979