Gene detail

Gene detail information of Glyur000925s00020312

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32140.1	2.00E-154	EamA-like transporter family
NR	XP_004498752.1	0	PREDICTED: uncharacterized vacuolar membrane protein YML018C-like [Cicer arietinum]
trEMBL	tr\|I3S903\|I3S903_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36745.1}

Sequence

Transcript Sequence

>Glyur000925s00020312.1
CTTCCCTCTGGCTCTCTTTCCAACCATTTTCTCTCCCTATTCTGTTGCTGCAAGGATCTTCCAACCTCCCTGCTTCCCCTGCAAAATCTTCTCACACACATAGTTGCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAATTTGTACGCAAAGGTTGAAGCTTTTTAGCTTCTGATGATTACGGGGTTGACAAATTGGTGAATTGAAGGGTGATTCTGGGATCTGGCAGAAGCAGAAACGTGTGGATCTCTGCANTTTCTGCAGTTTCCCCCATCTGGGTTCCNTTTTTCATTTTCTGCTTCCTTTCNCTGATGGGTAGTTGGAGATACAAGGCTGGATTGTTCCTCATAGCTACTGTGGTAATCATATGGGTCACCTCGGCTGAAGTCACCCAGGATATTTTTGTATACTATAAGCAGCCATTTGCAGTGACATATCTCGGAGCTTCTCTCATGGTAGTTTACCTCCCAATAGCATTCATTAAGGACTGGTTCTGTAACTTACTTAAACACCGGTCTTCTAAAAGTGGAAAAAATGCAGAAAGCGGGGACGAGTTTTCTGTCAGGAGTAGCTCCCCTCTCAAANGCAACGGAGTGCAGAAAAACTTTGAATTGGAACTGGGGAATGTGATTCGAAAAGACAGTGATTTGGACCTCTCAACTCTTGCAGAAGTAACACCGCTGGTGGCTAAATATAATGATACTATTGTGCTAAAGGCAGAGAAAGAACTTACATCAAAGGAAATTGCTACTTATGGTTTTTACATTGCACCTATCTGGTTTATAACAGAGTATCTATCAAATGCTGCCCTTGCACGAACAAGTGTCGCGAGTACAACAGTATTGTCATCTACTTCAGGACTCTTCACTCTTTTCATTGGTGTGTTAATGGGCCAAGACTCTTTGAATGTATCAAAAGTAGTTGCTGTCTTGGTCAGCATGGCTGGGGTTGCCATGACGACTCTGGGTAAAACTTGGGCTACAGATGACTCGCAATTTAGTGCTTCCATTGGACAGCGCTCTCTTGTTGGAGATCTTTTTGGCCTTCTCTCAGCCATGTCATATGGTCTATTTACAGTTCTTCTAAAAAAGTTTTCCGGTGAAGAAGGAGAACGGGTTGATGTGCAAAAGCTGTTTGGATATATTGGATTGTTTACACTNGTAGCACTATGGTGGCTTATCTGGCCGTTGTCGGCCTTAGGAATTGAACCAAAGTTTACNATTCCCCACTCTGCCAAAATGGATGAAGTGGTTCTTGCCAATGGATTTGTTGGAAGTGTTCTCTCAGACTACTTCTGGGCACTGTGTGTTGTATGGACAACTCCCCTTGTGGCCACTTTGGGCATGTCACTCACCATTCCTCTTGCTATGTTGGCTGACATGGTAATCCACGGTCGGCATTATTCAGNGTTATACATTCTTGGCTCAGCTCAGGTATTTGCAGGCTTTGTGATAGCTAATCTTTCAGATTGGATGACAAAGAAGTTGGGACTATAGCATATTGTTTTTTTCTTTTTCTTTTCTAGATTAATTTGGACAACACTTATTCTTTGGTCGGTCAACTTTCCACTACACTGATTGTGTGCTATACCACGAGTCAATATGTTGAAAAACAATGTCTTAATCCCTTTTTTTTTTGGTGATTTTCAAGGAAAGCAACAAAAGGGTNTGCTATCCATGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00925	89796	94200	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000925s00020312.1	PF00892.15	EamA	133	217	8.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.530
SRR1783600	control	7.451
SRR1783602	moderate drought stress	6.213
SRR1811619	moderate drought stress	6.281

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.809
DRR006520	Root Summer glycyrrhizin high producing strain	10.266
DRR006521	Root Winter glycyrrhizin high producing strain	11.615
DRR006522	Root Winter glycyrrhizin high producing strain	11.902
DRR006523	Root Summer glycyrrhizin low producing strain	11.789
DRR006524	Root Summer glycyrrhizin low producing strain	11.456
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.795

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.307
SRR2868004	Drought Stress (root)	32.952
SRR2967015	Control (root)	34.392

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.226
SRR9715740	Leaf	14.660
SRR9715741	Leaf	15.932
SRR9715739	Root	11.950
SRR9715742	Root	17.585
SRR9715743	Root	16.721

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.128
SRR8749028	MeJA induced 9h	9.824
SRR8749029	MeJA induced 9h	9.218
SRR8749030	Uninduced	7.724
SRR8749031	Uninduced	4.394
SRR8749032	Uninduced	4.296

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.882
SRR8400027	Control - Root	27.176