Gene detail information of Glyur000925s00020300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25290.3 | 8.00E-178 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein |
| NR | KEH39842.1 | 0 | octicosapeptide/phox/Bem1p domain protein [Medicago truncatula] |
| trEMBL | tr|A0A072VDJ0|A0A072VDJ0_MEDTR | 0 | Octicosapeptide/phox/Bem1p domain protein {ECO:0000313|EMBL:KEH39842.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00925 | 47454 | 49929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000925s00020300.1 | PF13414.1 | TPR_11 | 43 | 84 | 3.40E-07 |
| Glyur000925s00020300.1 | PF00564.19 | PB1 | 221 | 298 | 3.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.315 |
| SRR1783600 | control | 6.213 |
| SRR1783602 | moderate drought stress | 7.081 |
| SRR1811619 | moderate drought stress | 7.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.417 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.069 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.937 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.196 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.091 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.049 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.983 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.600 |
| SRR2868004 | Drought Stress (root) | 62.014 |
| SRR2967015 | Control (root) | 52.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 50.492 |
| SRR9715740 | Leaf | 41.416 |
| SRR9715741 | Leaf | 71.110 |
| SRR9715739 | Root | 4.957 |
| SRR9715742 | Root | 32.536 |
| SRR9715743 | Root | 29.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.241 |
| SRR8749028 | MeJA induced 9h | 26.867 |
| SRR8749029 | MeJA induced 9h | 15.446 |
| SRR8749030 | Uninduced | 22.476 |
| SRR8749031 | Uninduced | 24.859 |
| SRR8749032 | Uninduced | 14.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.404 |
| SRR8400027 | Control - Root | 34.326 |