Gene detail

Gene detail information of Glyur000923s00029701

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60840.1	5.00E-59	microtubule-associated protein 65-4
NR	XP_003623742.1	3.39E-130	NAD(P)H-quinone oxidoreductase chain [Medicago truncatula]
Swissprot	tr\|Q9LZY0\|MA654_ARATH	5.00E-83	65-kDa microtubule-associated protein 4
trEMBL	tr\|G7L0B6\|G7L0B6_MEDTR	1.00E-130	Microtubule associated protein, MAP65/ASE1 family protein {ECO:0000313\|EMBL:AES79960.2}

Sequence

Transcript Sequence

>Glyur000923s00029701.1
ATGGATTATGGGTTATTAACGCTCACTAATTGGCCACATCATCAATACACATTAATCTATGCTGACGTGTCAGTATCGGGTTCGATCCCGAGAAAACGGCTCCTCCCGCTCCGTTTCCCTCCCAAAAACCGATTTTTGATTCTCACACTTAACTCGTTGCTTTGCTCTTCTCAAACAAAAACTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCGCATTTCAGTTTTCAACCTATCTTCTTCGTGTGGAATCTGAATCACTTGTGATCAGGTCTGTTTTCCTTGGCATTTTCTCGATTCAGCCCTGTTTGGTTTCTGACAAAACGAAGTGTGAAAAAACATACTTGTTTCCTATGTTCAGCAATCGTAGCAGTCACTTTTCTCATCAAGAAACAACGTGTGATTTGTTACTGAAAGAACTTCAGTGGATGAAGCGAAGCAGTATAGAGCACAACTTCAGCATGAAATTGCTGATTATGAAGCTGAAATTGCTGGCATCTAAAGGACGTGAAACCGTTGTTTCACAACTTGAGGAGATGCGCAAATTGAAAACTGAAAGGAAGAAACAATTCTTGGAAGTCTTACATCAGTTGCANAATATTTCCAGTGAGCTCTATGGCTGTGTGGGGGATAATGCATATTTAGATGAGAACAACTTATCTTTGAAAAAACTAGAAGAATTACGGAGGCAGTTACTTCAATTTCAAAATGAAAAGGCCAGTCGACTGAAGCAGGTATCTGACCACCTGGACACACTTAATTCGTTGTGCTCGGTTCTTGGCCTGGATGTCAAAGACAAGATTTGTGAGATTTGCCCCACTATGACTTCCACTGTAACAAAAGATGTAAGTGACCACACAATAAAGAATTTGACTTCTGAAGTACAGAGTTTGAGAGAGGTTAAAGTGCAGAGAATGCAGAAGCTTCAAAGTCTTGCAACTGCACTATTAGAGATGTGGAATTTGATGGATACACCACTTGAGGAACAGCAGAATTTTCACAATGTGACCAGTAAAATTGCTGCTTTGGAATCTGAATTTACTGAGCCTAAAATGCTCTCAATTGACAATGTCATCTATGTTGAGAGAGAAGTTAGAAGGCTTGAGCAACTTAAATCAACCAAAATGAAAGAACTTGTACTGAGAAAGAAGTTGGAGTTAGAGGAAACATGCAGAAGTACACATTTGACTACACAAAATGTTTTTCCTAATGGGCATCCAATTGTGTTATTGGACTCTGGTATCAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCNGCNTATCATGTGGCACCAAGGAGTGAAGCTCCAAGCCAAGGTCTTGTTGTTCCTGAACCAGCTGCTGCTGCAGCTATTGGTGTCTCACCAGTGAGTGTAGGATTGGATGGAGCAGCAATTAAGAAGAAACGCGGTAGGCCGAGGAAATATGGGCCAGATGGGTCAGTTGCTAATACTATGGCATTGTCACCATTGCCTATCTCATCTTCAGCTCCACTGTCTAATGACTTTTCANCCGGGAAGCGGGGGAAACCGCGGGGGATGGTGGAGTACAAGCAGTCGAAAAAAGTGGGAGTGGATCATCTAGGGGACTCTGTTTGTACCAACTTTATGCCCCATATCATTACCGTCAATGCTGGTGAGGACATTACAATGAAGGTTATATCTTTTTCTCAACAAGGACCGCGAGCTATATGCATCCTATCTGCTAATGGTGTTATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGTTGAGAGAGAAGTTAGAAGGCTTGAGCAACTTAAATCAACCAAAATGAAAGAACTTGTACTGAGAAAGAAGTTGGAGTTAGAGGAAACATGCAGAAGTACACATTTGACTACACAAAATGTTTTTCCTAATGGGCATCCAATTGTGTTATTGGACTCTGAATCTGCAAACCATGAATGCCTGTTAGAACAAGTTGAGCACCAAATTACAAAGACAAAAGAAGAAGCTCTTAGCAGGAAAGAAATCCTTGAAANGGTTGAGAAGTGGTTGGCTGCTAGTCAAGAAGAAAGTTGGCTGGAGGAGTACAACAGGGATGATAATCGTTATAATGCTGGAAGAGGTGCGCATCTTACCTTGAAACGTGCTGAGAAAGCCCGTGCTTTGTTAAGCAAAATTCCTGGGATGGTAGAGGCAATAATTTTAAAAGTTACAGCATGGGAGAAAGAAAGAGGACTTGAGTTTTTGTATGATGGAACCCGGCTGCTTTCCATGCTTGAAGATTACAACACCTTAAGGCAGGAGAAAGAGAATGAAAGGCAAAGGCAGAAGGATCAAAAGAGACTAAAGGGACAACTGATGGCAGAGCATGAATCACTTTTTGGGTCAAAACCCAGCCCATTGAAAAGTGGGAAAAAGGCTCCCAGATGTTCAACAGGAGTTCCTCCTAGTACNAGAAAATTTTCTGTTGGGGGAGCAATGCTTCAGGATCTAAGACAAGCCNCTCTTATTCAGCAATCTAATAAAAAGGGTAACAACATAACCAATCAGAAAGGCTCTATCCTTCACAACAAGAATGACTGCCATTCAACCCAATCCTCAGGTGGTCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGATCACAGCCAAGGAACAAGAAGTAGGTCNGGTGGGATGAGCGTTTCTTTGTCAAGCCCGGATGGTTGTGTTGTAGGTGGCGGAGTTGCCGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTTGTGGGAAGTTTTCTGCCAAGCAACCAGCAAGACCAGAAAGTGAAGAAGCCCAAGTCTGATTATGCACCAGCTACTACTGTTTTTACCCCAGCCATTGCAGTGTCTTCTGCACCACCCCAAACNAATGGTGAAAGGGAGGGTGTCATGTGTGGACATCTACTGCAGAATTCCGGAACCCTTAACTCNAACCTTACTCCTCCCTCGGCCTTTCGCAGGGATAACTGGGTTAACATGCACGCTATGCAGGACTCGATGAAGTCCGGAACTGATATTAACATATCCTTGCCAGATAGTTAAGTTGATAATCATTAATCAACCCGCGATCGTGAATCCTCCGGTGTTGCGGACAACATTCATGACTGGGCTTATTTAATTAAAAGTTTCCATTTTCCAGTGTTGTTCTGTATCATGTAGATTGTTTCAAACCTATTGTCTAATGACCATAAGAGAAGTAGTTGACAAGTGTTGTAAGTTGCAGCTAGGTTTCTACATTTTTCTTTGTTTAGTAGAGCATCTGATTATGTCGGCTAATTAGGTAGATGCTGC

Protein Sequence

>Glyur000923s00029701.1
MDYGLLTLTNWPHHQYTLIYADVSVSGSIPRKRLLPLRFPPKNRFLILTLNSLLCSSQTKTPLLLLLLLLLLLLQIAFQFSTYLLRVESESLVIRSVFLGIFSIQPCLVSDKTKCEKTYLFPMFSNRSSHFSHQETTCDLLLKELQWMKRSSIEHNFSMKLLIMKLKLLASKGRETVVSQLEEMRKLKTERKKQFLEVLHQLXNISSELYGCVGDNAYLDENNLSLKKLEELRRQLLQFQNEKASRLKQVSDHLDTLNSLCSVLGLDVKDKICEICPTMTSTVTKDVSDHTIKNLTSEVQSLREVKVQRMQKLQSLATALLEMWNLMDTPLEEQQNFHNVTSKIAALESEFTEPKMLSIDNVIYVEREVRRLEQLKSTKMKELVLRKKLELEETCRSTHLTTQNVFPNGHPIVLLDSGISSGVTVIGAEAPSAYHVAPRSEAPSQGLVVPEPAAAAAIGVSPVSVGLDGAAIKKKRGRPRKYGPDGSVANTMALSPLPISSSAPLSNDFSXGKRGKPRGMVEYKQSKKVGVDHLGDSVCTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEVEREVRRLEQLKSTKMKELVLRKKLELEETCRSTHLTTQNVFPNGHPIVLLDSESANHECLLEQVEHQITKTKEEALSRKEILEXVEKWLAASQEESWLEEYNRDDNRYNAGRGAHLTLKRAEKARALLSKIPGMVEAIILKVTAWEKERGLEFLYDGTRLLSMLEDYNTLRQEKENERQRQKDQKRLKGQLMAEHESLFGSKPSPLKSGKKAPRCSTGVPPSTRKFSVGGAMLQDLRQAXLIQQSNKKGNNITNQKGSILHNKNDCHSTQSSGGRFEILSLSGSFMPTDHSQGTRSRSGGMSVSLSSPDGCVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKVKKPKSDYAPATTVFTPAIAVSSAPPQTNGEREGVMCGHLLQNSGTLNSNLTPPSAFRRDNWVNMHAMQDSMKSGTDINISLPDS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00923	71625	100437	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000226 microtubule cytoskeleton organization

GO:0000910 cytokinesis

molecular_function
GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000923s00029701.1	PF03999.7	MAP65_ASE1	176	403	1.80E-29
Glyur000923s00029701.1	PF03479.10	DUF296	543	602	3.80E-17
Glyur000923s00029701.1	PF03999.7	MAP65_ASE1	598	836	9.50E-55
Glyur000923s00029701.1	PF03479.10	DUF296	862	933	7.70E-17
Glyur000923s00029701.2	PF03999.7	MAP65_ASE1	176	403	1.00E-29
Glyur000923s00029701.2	PF03479.10	DUF296	543	659	4.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.928
SRR1783600	control	6.034
SRR1783602	moderate drought stress	7.967
SRR1811619	moderate drought stress	7.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.741
DRR006520	Root Summer glycyrrhizin high producing strain	5.991
DRR006521	Root Winter glycyrrhizin high producing strain	3.189
DRR006522	Root Winter glycyrrhizin high producing strain	3.156
DRR006523	Root Summer glycyrrhizin low producing strain	7.100
DRR006524	Root Summer glycyrrhizin low producing strain	7.345
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.857
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.960

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.119
SRR2868004	Drought Stress (root)	12.438
SRR2967015	Control (root)	18.172

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.269
SRR9715740	Leaf	1.731
SRR9715741	Leaf	1.295
SRR9715739	Root	11.671
SRR9715742	Root	8.184
SRR9715743	Root	7.621

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.412
SRR8749028	MeJA induced 9h	22.626
SRR8749029	MeJA induced 9h	21.902
SRR8749030	Uninduced	11.258
SRR8749031	Uninduced	9.368
SRR8749032	Uninduced	10.644

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.071
SRR8400027	Control - Root	14.719