Gene detail information of Glyur000923s00029700 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12340.1 | 5.00E-35 | Cornichon family protein |
| NR | NP_001235864.1 | 2.42E-78 | uncharacterized protein LOC100306239 [Glycine max] |
| Swissprot | tr|Q84W04|CNIH4_ARATH | 7.00E-50 | Protein cornichon homolog 4 |
| trEMBL | tr|C6SYL0|C6SYL0_SOYBN | 9.00E-79 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G45290.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00923 | 66760 | 69889 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000923s00029700.1 | PF03311.9 | Cornichon | 16 | 137 | 4.20E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.408 |
| SRR1783600 | control | 5.513 |
| SRR1783602 | moderate drought stress | 5.360 |
| SRR1811619 | moderate drought stress | 5.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.284 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.338 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.946 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.014 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.650 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.247 |
| SRR2868004 | Drought Stress (root) | 5.795 |
| SRR2967015 | Control (root) | 5.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.432 |
| SRR9715740 | Leaf | 8.809 |
| SRR9715741 | Leaf | 7.150 |
| SRR9715739 | Root | 4.015 |
| SRR9715742 | Root | 5.893 |
| SRR9715743 | Root | 5.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.334 |
| SRR8749028 | MeJA induced 9h | 3.619 |
| SRR8749029 | MeJA induced 9h | 3.315 |
| SRR8749030 | Uninduced | 0.241 |
| SRR8749031 | Uninduced | 0.271 |
| SRR8749032 | Uninduced | 0.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.696 |
| SRR8400027 | Control - Root | 7.718 |