Gene detail

Gene detail information of Glyur000923s00029696

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45400.1	9.00E-84	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_006587891.1	0	PREDICTED: vestitone reductase-like [Glycine max]
COG	YP_002015379.1	9.00E-38	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q40316\|VESTR_MEDSA	1.00E-161	Vestitone reductase
trEMBL	tr\|I1L6V2\|I1L6V2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G40570.1}

Sequence

Transcript Sequence

>Glyur000923s00029696.1
GATAAGGCAAAAGCACTTGGTTCGTGGGGTCATATTGCGGTACAAAATAGGCATATATATTCTGAACCGACAATATTAAAAGTAGAGGGGAAAAGAAAAAGGATTAAGCAGCCACAGAGGAAGCAGAGAGTAGCAATGAAAGAGGGGAAAGGAAGAGTTTGTGTAACTGGAGGTACAGGATTTATTGGCTCATGGCTCATCAAGAGACTTCTTGAAGATGGTTACACTGTTAATACCACCATTAGATCTGATCCAGGTGCATCCCAAAAGCTAAAAANTTTCAATGCTGATCTCAGCAACCCAGAAAGCTTTGGTGCAGCAATTGAAGGGTGCATTGGGATATTCCACACAGCTACTCCAATTGATTTAGAAGTGAAGGAACCAGAGGAAGTAGTGACTAAAAGAACAATTGATGGAGCATTGGGTATTCTAAAAGCATGCCTGAATTCAAAGACAGTGAAGAGGGTTGTTTACACTTCAAGTGCCTCTGCTGTGTACTGGCAGGGGAAAGAAGAAGAAGTAATGGATGAGAGTTATTGGAGTGATGCAAATCTTCTTAGAGATTTGAAGCCATTTGCTTGGGCATATTCAATCTCNAAGACATTGGCAGAGAAGGAAGTTCTTGAATTTGGAGAGCAGCATGGGTTGGATGTTGTGACTCTAATCCCAACTTCTGTTCTTGGACCCTTCATTTGTCCTAAGATTCCTGGCTCAATTTATACCTCTCTGGCTTTCTTATTTGGTGACAATAATCCATTTGGTTTCTCTGGTTTCCATATGGTGCATGTTGATGACGTGGCAAGAGCACATATATTCCTGCTTGAGCATCCTAATCCAAAAGGAAGATATAATTGTTCATCATTCATTGCAACCATTGAACAAATAGNTGAACTTCTTTCTGCCAAATACCCTGAATTTCAAATACCAACACTAGACGAGCTGAAGAAAGGTCCCAAGCTTCCACATTTAACCTCGAAGAAACTCATGGATGCTGGATTCGAGTTCAAACATAGCCTTGAGGAAATGTTTGACGATACAATTCAATGTTGCAAGGAAAAGGGTTATCTGTGAACCATGAAATTAGGAAGAAAATAAGTGATAGTAGTTAAATGATCATGTCGCATGGCATTACAACAACATATGCGTGAACTTATTTACAAGTAACACTGCTTTGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00923	36396	39246	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000923s00029696.1	PF01370.16	Epimerase	53	285	1.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.703
SRR1783600	control	0.681
SRR1783602	moderate drought stress	2.832
SRR1811619	moderate drought stress	2.868

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.742
DRR006520	Root Summer glycyrrhizin high producing strain	3.915
DRR006521	Root Winter glycyrrhizin high producing strain	77.235
DRR006522	Root Winter glycyrrhizin high producing strain	74.362
DRR006523	Root Summer glycyrrhizin low producing strain	6.191
DRR006524	Root Summer glycyrrhizin low producing strain	6.278
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.290

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.836
SRR2868004	Drought Stress (root)	3.300
SRR2967015	Control (root)	2.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.974
SRR9715740	Leaf	4.543
SRR9715741	Leaf	63.135
SRR9715739	Root	0.036
SRR9715742	Root	4.382
SRR9715743	Root	3.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.771
SRR8749028	MeJA induced 9h	8.203
SRR8749029	MeJA induced 9h	3.941
SRR8749030	Uninduced	67.308
SRR8749031	Uninduced	121.372
SRR8749032	Uninduced	51.100

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.503
SRR8400027	Control - Root	3.211